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Translational Metagenomics

Section edited by Souhaila Al Khodor

© Kateryna_Kon / stock.adobe.comThe Translational Metagenomics section aims to embrace studies addressing the role of the human microbiome in health and disease. This section encompasses studies about the development and application of metagenomics, metatranscriptomics, microbial metabolomics or novel bioinformatics tools used to improve our knowledge on the microbiome. 

The Translational Metagenomics section is especially interested in studies that go beyond description of the microbial composition and include experimental models used to support the proposed role of the microbiome in human health and diseases. In addition, studies about metagenomics integration with other omics are highly recommended. Studies of pathogens interaction with the host will not be considered.

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  2. For many years, the role of the microbiome in tumor progression, particularly the tumor microbiome, was largely overlooked. The connection between the tumor microbiome and the tumor genome still requires furth...

    Authors: Shi-Wei Guan, Quan Lin, Xi-Dong Wu and Hai-Bo Yu
    Citation: Journal of Translational Medicine 2023 21:537
    Content type: Research Published on:

  3. There are many studies indicating that alterations in the abundance of certain gut microbiota are associated with colorectal cancer (CRC). However, a causal relationship has not been identified due to confound...

    Authors: Yaoxian Xiang, Chan Zhang, Jing Wang, Yurong Cheng, Li Wang, Yingying Tong and Dong Yan
    Citation: Journal of Translational Medicine 2023 21:535
    Content type: Research Published on:

  4. Insulin has been reported to exhibit anti-inflammatory activities in the context of bowel inflammation. However, the role of the interaction between insulin and the microbiota in gut health is unclear. Our goa...

    Authors: Shuying He, Jiating Li, Zirong Yao, Zixian Gao, Yonghong Jiang, Xueqing Chen and Liang Peng
    Citation: Journal of Translational Medicine 2023 21:498
    Content type: Research Published on:

  5. The prevalence of hypertension in Qatar is 33 percent of the adult population. It is postulated that the salivary microbiome can regulate blood pressure (BP). However, limited investigations exist to prove thi...

    Authors: Selvasankar Murugesan and Souhaila Al Khodor
    Citation: Journal of Translational Medicine 2023 21:454
    Content type: Research Published on:

  6. Recent studies have uncovered that the microbiota in patients with head and neck cancers is significantly altered and may drive cancer development. However, there is limited data to explore the unique microbio...

    Authors: Shuting Yu, Junru Chen, Yan Zhao, Fangxu Yan, Yue Fan, Xin Xia, Guangliang Shan, Peng Zhang and Xingming Chen
    Citation: Journal of Translational Medicine 2023 21:438
    Content type: Research Published on:

  7. The human gut microbiota (GM) is involved in the pathogenesis of hypertension (HTN), and could be affected by various factors, including sex and geography. However, available data directly linking GM to HTN ba...

    Authors: Jing Lv, Jihan Wang, Yan Yu, Mengyao Zhao, Wenjuan Yang, Junye Liu, Yan Zhao, Yanjie Yang, Guodong Wang, Lei Guo and Heping Zhao
    Citation: Journal of Translational Medicine 2023 21:429
    Content type: Research Published on:

  8. The purpose of this study was to describe the changes in the gut microbiome of patients with cirrhosis and hepatic encephalopathy (HE), as well as quantify the variations in short-chain fatty acid (SCFA) and t...

    Authors: Qiang Wang, Chengxin Chen, Shi Zuo, Kun Cao and Haiyang Li
    Citation: Journal of Translational Medicine 2023 21:395
    Content type: Research Published on:

  10. Gestational diabetes mellitus (GDM) is a common complication of pregnancy that has been associated with an increased risk of obesity and diabetes in the offspring. Pregnancy is accompanied by tightly regulated...

    Authors: Parul Singh, Duaa Ahmed Idris Elhaj, Ibrahim Ibrahim, Hala Abdullahi and Souhaila Al Khodor
    Citation: Journal of Translational Medicine 2023 21:364
    Content type: Review Published on:

  11. Lipid A is the primary immunostimulatory part of the lipopolysaccharide (LPS) molecule. The inflammatory response of LPS varies and depends upon the number of acyl chains and phosphate groups in lipid A which ...

    Authors: Maryia Khomich, Huang Lin, Andrei Malinovschi, Susanne Brix, Lucia Cestelli, Shyamal Peddada, Ane Johannessen, Carsten Eriksen, Francisco Gomez Real, Cecilie Svanes and Randi Jacobsen Bertelsen
    Citation: Journal of Translational Medicine 2023 21:354
    Content type: Research Published on:

  12. Gut microbiota is closely related to human health and disease because, together with their metabolites, gut microbiota maintain normal intestinal peristalsis. The use of antibiotics or opioid anesthetics, or b...

    Authors: TianRong Ma, XiaoLei Xue, Hui Tian, XinXiu Zhou, JunKe Wang, ZhiWen Zhao, MingFei Wang, JiYuan Song, RenXiang Feng, Leping Li, Changqing Jing and Feng Tian
    Citation: Journal of Translational Medicine 2023 21:349
    Content type: Review Published on:

  13. Icariin (ICA), an active ingredient extracted from Epimedium species, has shown promising results in the treatment of Alzheimer's disease (AD), although its potential therapeutic mechanism remains largely unknown...

    Authors: Yuqing Liu, Hongli Li, Xiaowei Wang, Jianhua Huang, Di Zhao, Yejun Tan, Zheyu Zhang, Zhen Zhang, Lemei Zhu, Beibei Wu, Zhibao Chen and Weijun Peng
    Citation: Journal of Translational Medicine 2023 21:277
    Content type: Research Published on:

  14. The pathogenesis of interstitial cystitis/bladder pain syndrome (IC/BPS) has not been elucidated, but urinary microorganisms and metabolites have been shown to be closely associated with the inflammatory respo...

    Authors: Zhenming Zheng, Jintao Hu, Wenshuang Li, Kaiqun Ma, Caixia Zhang, Kuiqing Li and Yousheng Yao
    Citation: Journal of Translational Medicine 2023 21:266
    Content type: Research Published on:

  15. Lactobacillus has been demonstrated to serve a protective role in intestinal injury. However, the relationship between Lactobacillus murinus (L. murinus)-derived tryptophan metabolites and intestinal ischemia/rep...

    Authors: Fang-Ling Zhang, Xiao-Wei Chen, Yi-Fan Wang, Zhen Hu, Wen-Juan Zhang, Bo-Wei Zhou, Peng-Fei Ci and Ke-Xuan Liu
    Citation: Journal of Translational Medicine 2023 21:264
    Content type: Research Published on:

  16. The human body is colonized by abundant and diverse microorganisms, collectively known as the microbiome. The oral cavity has more than 700 species of bacteria and consists of unique microbiome niches on mucos...

    Authors: Xiaoyan Huang, Xiangyu Huang, Yi Huang, Jiarong Zheng, Ye Lu, Zizhao Mai, Xinyuan Zhao, Li Cui and Shaohong Huang
    Citation: Journal of Translational Medicine 2023 21:211
    Content type: Review Published on:

  17. Temozolomide (TMZ) is the preferred chemotherapy strategy for glioma therapy. As a second-generation alkylating agent, TMZ provides superior oral bio-availability. However, limited response rate (less than 50%...

    Authors: Xiaoying Hou, Hongzhi Du, Yufei Deng, Haiping Wang, Jinmi Liu, Jialu Qiao, Wei Liu, Xiji Shu, Binlian Sun and Yuchen Liu
    Citation: Journal of Translational Medicine 2023 21:198
    Content type: Research Published on:

  18. Suboptimal maternal oral health during pregnancy is potentially associated with adverse birth outcomes and increased dental caries risks in children. This study aimed to assess the oral microbiome and immune r...

    Authors: Tong Tong Wu, Michael Sohn, Samantha Manning, Robert Beblavy, Steven Gill, Sally Quataert, Shruti Vasani, Hoonji Jang, Yan Zeng, Jennifer Bruno, Adriana Vazquez, Kevin Fiscella and Jin Xiao
    Citation: Journal of Translational Medicine 2023 21:172
    Content type: Research Published on:

  19. The realization of the “microbiota–gut–brain” axis plays a critical role in neuropsychiatric disorders, particularly depression, is advancing rapidly. Matrine is a natural bioactive compound, which has been fo...

    Authors: Ming Zhang, Aoqiang Li, Qifang Yang, Jingyi Li, Lihua Zheng, Guannan Wang, Ying Sun, Yanxin Huang, Muqing Zhang, Zhenbo Song and Lei Liu
    Citation: Journal of Translational Medicine 2023 21:145
    Content type: Research Published on:

  20. Gut mycobiota plays a crucial role in benign liver diseases; however, its correlation with hepatocellular carcinoma (HCC) remains elusive. This study aimed to elucidate fungal differences in patients with HCC-...

    Authors: Lilong Zhang, Chen Chen, Dongqi Chai, Chunlei Li, Zhendong Qiu, Tianrui Kuang, Li Liu, Wenhong Deng and Weixing Wang
    Citation: Journal of Translational Medicine 2023 21:126
    Content type: Research Published on:

  21. Gut dysbacteriosis has been reported as one of the etiologies for irritable bowel syndrome (IBS). However, the association between gut microbiota and IBS is still inconclusive.

    Authors: Han Chen, Rong Ou, Nana Tang, Wei Su, Ruoyun Yang, Xin Yu, Guoxin Zhang, Jianhua Jiao and Xiaoying Zhou
    Citation: Journal of Translational Medicine 2023 21:117
    Content type: Research Published on:

  22. Alterations in oral microbiota in patients with systemic lupus erythematosus (SLE) is less evaluated. The aim of this study was to compare the characteristics of the oral microbiome in SLE patients and healthy...

    Authors: Jinyan Guo, Guangying Cui, Wei Huang, Zhaohui Zheng, Tianfang Li, Guanmin Gao, Zhen Huang, Yuwei Zhan, Suying Ding, Shengyun Liu, Zujiang Yu and Zhigang Ren
    Citation: Journal of Translational Medicine 2023 21:95
    Content type: Research Published on:

  23. Gut microbiota plays a critical role in the onset and development of depression, but the underlying molecular mechanisms are unclear. This study was conducted to observe the characteristics of gut microbiota, ...

    Authors: Jing Xie, Qi Zhong, Wen-tao Wu and Jian-jun Chen
    Citation: Journal of Translational Medicine 2023 21:93
    Content type: Research Published on:

  24. Intratumoral microbial communities have been recently discovered to exist in a variety of cancers and have been found to be intricately involved in tumour progression. Therefore, investigating the profiles and...

    Authors: Yuting He, Qiyao Zhang, Xiao Yu, Shuijun Zhang and Wenzhi Guo
    Citation: Journal of Translational Medicine 2023 21:68
    Content type: Research Published on:

  25. Features of the gut microbiota have been associated with several chronic diseases and longevity in preclinical models as well as in observational studies. Whether these relations underlie causal effects in hum...

    Authors: Eloi Gagnon, Patricia L. Mitchell, Hasanga D. Manikpurage, Erik Abner, Nele Taba, Tõnu Esko, Nooshin Ghodsian, Sébastien Thériault, Patrick Mathieu and Benoit J. Arsenault
    Citation: Journal of Translational Medicine 2023 21:60
    Content type: Research Published on:

  26. Necrotizing enterocolitis (NEC) is a devastating gastrointestinal disease with high morbidity and mortality, affecting preterm infants especially those with very low and extremely low birth weight. β-glucan ha...

    Authors: Xingdao Zhang, Yuni Zhang, Yu He, Xingwang Zhu, Qing Ai and Yuan Shi
    Citation: Journal of Translational Medicine 2023 21:14
    Content type: Research Published on:

  27. Antibody-mediated rejection (AMR) remains one of the major barriers for graft survival after kidney transplantation. Our previous study suggested a gut microbiota dysbiosis in kidney transplantation recipients...

    Authors: Xin Li, Ruoying Li, Bingqing Ji, Lili Zhao, Junpeng Wang and Tianzhong Yan
    Citation: Journal of Translational Medicine 2022 20:614
    Content type: Research Published on:

  28. Integrative analysis approaches of metagenomics and metabolomics have been widely developed to understand the association between disease and the gut microbiome. However, the different profiling patterns of di...

    Authors: Lanlan Zhao, Cheng Wang, Shanxin Peng, Xiaosong Zhu, Ziyi Zhang, Yanyan Zhao, Jinling Zhang, Guoping Zhao, Tao Zhang, Xueyuan Heng and Lei Zhang
    Citation: Journal of Translational Medicine 2022 20:459
    Content type: Research Published on:

  29. Globally, gastric cancer is the third most common cancer and the third leading cause of cancer death. Proximal and distal gastric cancers have distinct clinical and biological behaviors. The microbial composit...

    Authors: Yan Yang, Daofeng Dai, Wen Jin, Yingying Huang, Yingzi Zhang, Yiran Chen, Wankun Wang, Wu Lin, Xiangliu Chen, Jing Zhang, Haohao Wang, Haibin Zhang and Lisong Teng
    Citation: Journal of Translational Medicine 2022 20:439
    Content type: Research Published on:

  30. The pathogenesis of kidney stone disease (KSD) is not fully understood, and potential contributing factors remain to be explored. Several studies have revealed that the urinary microbiome (urobiome) of stone f...

    Authors: Sen-Yuan Hong, Yuan-Yuan Yang, Jin-Zhou Xu, Qi-Dong Xia, Shao-Gang Wang and Yang Xun
    Citation: Journal of Translational Medicine 2022 20:431
    Content type: Research Published on:

  31. In recent years, there has been a greater emphasis on the impact of microbial populations inhabiting the gastrointestinal tract on human health and disease. According to the involvement of microbiota in modula...

    Authors: Hourieh Sadrekarimi, Zhanna R. Gardanova, Morteza Bakhshesh, Farnoosh Ebrahimzadeh, Amirhossein Fakhre Yaseri, Lakshmi Thangavelu, Zahra Hasanpoor, Firoozeh Abolhasani Zadeh and Mohammad Saeed Kahrizi
    Citation: Journal of Translational Medicine 2022 20:301
    Content type: Review Published on:

  32. Chronic obstructive pulmonary disease (COPD), a prevalent, progressive respiratory disease, has become the third leading cause of death globally. Increasing evidence suggests that intestinal and pulmonary micr...

    Authors: Yu Jia, Tiantian He, Di Wu, Jiabing Tong, Jie Zhu, Zegeng Li and Jingcheng Dong
    Citation: Journal of Translational Medicine 2022 20:281
    Content type: Research Published on:

  33. Metagenomic next-generation sequencing (mNGS) is an important supplement to conventional tests for pathogen detections of pneumonia. However, mNGS pipelines were limited by irregularities, high proportion of h...

    Authors: Yukun He, Kechi Fang, Xing Shi, Donghong Yang, Lili Zhao, Wenyi Yu, Yali Zheng, Yu Xu, Xinqian Ma, Li Chen, Yu Xie, Yan Yu, Jing Wang and Zhancheng Gao
    Citation: Journal of Translational Medicine 2022 20:195
    Content type: Research Published on:

  35. The human microbiome has been linked to several diseases. Gastrointestinal diseases are still one of the most prominent area of study in host-microbiome interactions however the underlying microbial mechanisms...

    Authors: Pouyan Ghaffari, Saeed Shoaie and Lars K. Nielsen
    Citation: Journal of Translational Medicine 2022 20:173
    Content type: Review Published on:

  36. The human gastrointestinal tract is inhabited by the largest microbial community within the human body consisting of trillions of microbes called gut microbiota. The normal flora is the site of many physiologi...

    Authors: Prisca Gebrayel, Carole Nicco, Souhaila Al Khodor, Jaroslaw Bilinski, Elisabetta Caselli, Elena M. Comelli, Markus Egert, Cristina Giaroni, Tomasz M. Karpinski, Igor Loniewski, Agata Mulak, Julie Reygner, Paulina Samczuk, Matteo Serino, Mariusz Sikora, Annalisa Terranegra…
    Citation: Journal of Translational Medicine 2022 20:111
    Content type: Review Published on:

  37. Significant links between the microbiota and human health have emerged in the last 20 years. A correlation has recently been demonstrated between changes in the gut microbiota and the development of cancer. Th...

    Authors: Sa’ed H. Zyoud, Samah W. Al-Jabi, Riad Amer, Muna Shakhshir, Moyad Shahwan, Ammar A. Jairoun, Maha Akkawi and Adham Abu Taha
    Citation: Journal of Translational Medicine 2022 20:83
    Content type: Research Published on:

  38. Chronic obstructive pulmonary disease (COPD) is a prevalent, progressive respiratory disease, and acute exacerbations of COPD (AECOPD) can accelerate the deterioration of the disease. Increasing evidence sugge...

    Authors: Linfan Su, Yixian Qiao, Jinmei Luo, Rong Huang, Zhiwei Li, Hongbing Zhang, Hongmei Zhao, Jing Wang and Yi Xiao
    Citation: Journal of Translational Medicine 2022 20:76
    Content type: Research Published on:

  39. The treatment of sepsis remains a major challenge worldwide. Aminophylline has been shown to have anti-inflammatory effects; however, the role of aminophylline in sepsis, a disease characterized by immune dysr...

    Authors: Yuanzhe Li, Huayan Zhao, Guiying Sun, Yongtao Duan, Yanjun Guo, Lina Xie and Xianfei Ding
    Citation: Journal of Translational Medicine 2022 20:69
    Content type: Research Published on:

  40. It is widely acknowledged that gastric cancer seriously affects the quality of life and survival of patients. The correlation between the microbiota and gastric cancer has attracted extensive attention in rece...

    Authors: Yan Yang, Yingying Huang, Wu Lin, Jin Liu, Xiangliu Chen, Chuanzhi Chen, Xiongfei Yu and Lisong Teng
    Citation: Journal of Translational Medicine 2022 20:52
    Content type: Review Published on:

  41. Compelling evidences demonstrated that gut microbiota dysbiosis plays a critical role in the pathogenesis of inflammatory bowel diseases (IBD). Therapies for targeting the microbiota may provide alternative op...

    Authors: Fang Dong, Fangfei Xiao, Xiaolu Li, Youran Li, Xufei Wang, Guangjun Yu, Ting Zhang and Yizhong Wang
    Citation: Journal of Translational Medicine 2022 20:33
    Content type: Research Published on:

  42. Multiple myeloma is characterized by osteolytic lesions caused by reduced bone formation and activated bone resorption. An important feature of myeloma is a failure of bone healing after successful treatment. ...

    Authors: Rui Liu, Yuping Zhong, Rui Chen, Shiyi Chen, Yazhu Huang and Huan Liu
    Citation: Journal of Translational Medicine 2022 20:16
    Content type: Research Published on:

  43. The status of vaginal microbiota in persistent high-risk human papilloma virus (HR-HPV) infection is unclear. The present work aimed to identify the vaginal microbiota of persistent HPV infection and explore t...

    Authors: Ling Mei, Tao Wang, Yueyue Chen, Dongmei Wei, Yueting Zhang, Tao Cui, Jian Meng, Xiaoli Zhang, Yuqing Liu, Lisha Ding and Xiaoyu Niu
    Citation: Journal of Translational Medicine 2022 20:12
    Content type: Research Published on:

  44. Necrotizing enterocolitis (NEC) remains a life-threatening disease in neonates. Numerous studies have shown a correlation between the intestinal microbiota and NEC, but the causal link remains unclear. This study...

    Authors: Yu He, Weixia Du, Sa Xiao, Benhua Zeng, Xiang She, Dong Liu, Hua Du, Luquan Li, Fang Li, Qing Ai, Junli He, Chao Song, Hong Wei, Xiaodong Zhao and Jialin Yu
    Citation: Journal of Translational Medicine 2021 19:510
    Content type: Research Published on:

  45. In recent years, the incidence rate of Thyroid carcinoma (TC) has been increasing worldwide. Thus, research on factors of TC carcinogenesis may promote TC prevention and decrease the incidence rate. There are ...

    Authors: Daofeng Dai, Yan Yang, Yong Yang, Tianfeng Dang, Jiansheng Xiao, Weibin Wang, Lisong Teng, Juan Xu, Jing Ye and Hongqun Jiang
    Citation: Journal of Translational Medicine 2021 19:488
    Content type: Research Published on:

  46. Comparing the microbiome compositions obtained under different physiological conditions has frequently been attempted in recent years to understand the functional influence of microbiomes in the occurrence of ...

    Authors: Sukjung Choi, Jongsuk Chung, Mi-La Cho, Donghyun Park and Sun Shim Choi
    Citation: Journal of Translational Medicine 2021 19:485
    Content type: Research Published on:

  47. The causes of gestational diabetes mellitus (GDM) are still unclear. Recent studies have found that the imbalance of the gut microbiome could lead to disorders of human metabolism and immune system, resulting ...

    Authors: Yao Su, Hong-Kun Wang, Xu-Pei Gan, Li Chen, Yan-Nan Cao, De-Cui Cheng, Dong-Yao Zhang, Wen-Yu Liu, Fei-Fei Li and Xian-Ming Xu
    Citation: Journal of Translational Medicine 2021 19:366
    Content type: Research Published on:

  48. Inflammatory bowel diseases (IBD), mainly comprising ulcerative colitis (UC) and Crohn's Disease, are most often a polygenic disorder with contributions from the intestinal microbiome, defects in barrier funct...

    Authors: Juan Huang, Ziyan Yang, Yanyun Li, Xingxing Chai, Yanfang Liang, Bihua Lin, Ziyu Ye, Shaobing Zhang, Zhengping Che, Hailiang Zhang, Xueying Zhang, Zhao Zhang, Tao Chen, Weiqing Yang and Jincheng Zeng
    Citation: Journal of Translational Medicine 2021 19:356
    Content type: Research Published on:

  49. The gastrointestinal microbiome is an important component of the human body and is closely related to human health and disease. This study describes the hotspots of the human gastrointestinal microbiome resear...

    Authors: Xingzhu Yuan, Chengting Chang, Xinrong Chen and Ka Li
    Citation: Journal of Translational Medicine 2021 19:327
    Content type: Review Published on:

Journal of Translational Medicine

ISSN: 1479-5876

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