The Antiretroviral Therapy Cohort Collaboration: Life expectancy of individuals on combination antiretroviral therapy in high-income countries: a collaborative analysis of 14 cohort studies. The Lancet. 2008, 372: 293-9. 10.1016/S0140-6736(08)61113-7.
Article
Google Scholar
Egger M, May M, Chêne G, Phillips AN, Ledergerber B, Dabis F, Costagliola D, D'Arminio Monforte A, de Wolf F, Reiss P, Lundgren JD, Justice AC, Staszewski S, Leport C, Hogg RS, Sabin CA, Gill MJ, Salzberger B, Sterne JA, ART Cohort Collaboration: Prognosis of HIV-1-infected patients starting highly active antiretroviral therapy: a collaborative analysis of prospective studies. The Lancet. 2002, 360: 119-29. 10.1016/S0140-6736(02)09411-4.
Article
Google Scholar
Lima VD, Hogg RS, Harrigan PR, Moore D, Yip B, Wood E, Montaner JS: Continued improvement in survival among HIV-infected individuals with newer forms of highly active antiretroviral therapy. AIDS. 2007, 21: 685-92. 10.1097/QAD.0b013e32802ef30c.
Article
PubMed
Google Scholar
May MT, Sterne JA, Costagliola D, Sabin CA, Phillips AN, Justice AC, Dabis F, Gill J, Lundgren J, Hogg RS, de Wolf F, Fätkenheuer G, Staszewski S, d'Arminio Monforte A, Egger M: Antiretroviral Therapy (ART) Cohort Collaboration. HIV treatment response and prognosis in Europe and North America in the first decade of highly active antiretroviral therapy: a collaborative analysis. The Lancet. 2006, 368: 451-8. 10.1016/S0140-6736(06)69152-6.
Article
Google Scholar
Palella FJ, Delaney KM, Moorman AC, Loveless MO, Fuhrer J, Satten GA, Aschman DJ, Holmberg SD: Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection. HIV Outpatient Study Investigators. The New England journal of medicine. 1998, 338: 853-60. 10.1056/NEJM199803263381301.
Article
PubMed
Google Scholar
Panel on Antiretroviral Guidelines for Adults and Adolescents: Guidelines for the use of antiretroviral agents in HIV-infected adults and adolescents. Department of Health and Human Services DHHS. 2009, 1-161. [http://aidsinfo.nih.gov/contentfiles/AdultandAdolescentGL.pdf]
Google Scholar
European AIDS Clinical Society Guidelines: Guidelines for the Clinical Management and Treatment of HIV-infected Adults in Europe. EACS-guidelines. 2009, Version 5, [http://www.europeanaidsclinicalsociety.org/guidelines.asp]
Google Scholar
Thompson MA, Aberg JA, Cahn P, Montaner JS, Rizzardini G, Telenti A, Gatell JM, Günthard HF, Hammer SM, Hirsch MS, Jacobsen DM, Reiss P, Richman DD, Volberding PA, Yeni P, Schooley RT, International AIDS Society-USA: Antiretroviral treatment of adult HIV infection: 2010 recommendations of the International AIDS Society-USA panel. JAMA. 2010, 21 (304 (3)): 321-33. 10.1001/jama.2010.1004.
Article
Google Scholar
Hirsch MS, Günthard HF, Schapiro JM, Brun-Vézinet F, Clotet B, Hammer SM, Johnson VA, Kuritzkes DR, Mellors JW, Pillay D, Yeni PG, Jacobsen DM, Richman DD, International AIDS Society-USA: Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel. Clin Infect Dis. 2008, 47: 266-85. 10.1086/589297.
Article
PubMed
Google Scholar
Günthard HF, Wong JK, Ignacio CC, Havlir DV, Richman DD: Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples. AIDS Res Hum Retroviruses. 1998, 14: 869-876. 10.1089/aid.1998.14.869.
Article
PubMed
Google Scholar
Schuurman R, Brambilla D, de Groot T, Huang D, Land S, Bremer J, Benders I, Boucher CA: Underestimation of HIV type 1 drug resistance mutations: results from the ENVA-2 genotyping proficiency program. AIDS Res Hum Retroviruses. 2002, 18: 243-248. 10.1089/088922202753472801.
Article
CAS
PubMed
Google Scholar
Bacheler L, Jeffrey S, Hanna G, D'Aquila R, Wallace L, Logue K, Cordova B, Hertogs K, Larder B, Buckery R, Baker D, Gallagher K, Scarnati H, Tritch R, Rizzo C: Genotypic correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapy. J Virol. 2001, 75: 4999-5008. 10.1128/JVI.75.11.4999-5008.2001.
Article
PubMed Central
CAS
PubMed
Google Scholar
Beerenwinkel N, Däumer M, Oette M, Korn K, Hoffmann D, Kaiser R, Lengauer T, Selbig J, Walter H, Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 2003, 31: 3850-5. 10.1093/nar/gkg575.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mazzotta F, Lo Caputo S, Torti C, Tinelli C, Pierotti P, Castelli F, Lazzarin A, Angarano G, Maserati R, Gianotti N, Ladisa N, Quiros-Roldan E, Rinehart AR, Carosi G: Real versus virtual phenotype to guide treatment in heavily pretreated patients: 48-week follow-up of the Genotipo-Fenotipo di Resistenza (GenPheRex) trial. Journal of acquired immune deficiency syndromes. 2003, 32: 268-80. 10.1097/00126334-200303010-00005.
Article
PubMed
Google Scholar
Perez-Elias MJ, Garcia-Arota I, Muñoz V, Santos I, Sanz J, Abraira V, Arribas JR, González J, Moreno A, Dronda F, Antela A, Pumares M, Martí-Belda P, Casado JL, Geijos P, Moreno S: Phenotype or virtual phenotype for choosing antiretroviral therapy after failure: a prospective, randomized study. Antiviral therapy. 2003, 8: 577-84.
CAS
PubMed
Google Scholar
Holguin A, Sune C, Hamy F, Soriano V, Klimkait T: Natural polymorphisms in the protease gene modulate the replicative capacity of non-B HIV-1 variants in the absence of drug pressure. J Clin Virol. 2006, 36: 264-71. 10.1016/j.jcv.2006.05.001.
Article
CAS
PubMed
Google Scholar
Klimkait T: A sensitive replicative system to assess HIV-1 drug resistance. American clinical laboratory. 2002, 21: 20-4.
CAS
PubMed
Google Scholar
Louvel S, Battegay M, Vernazza P, Bregenzer T, Klimkait T, Hamy F: Detection of drug-resistant HIV minorities in clinical specimens and therapy failure. HIV Med. 2008, 9: 133-41. 10.1111/j.1468-1293.2007.00529.x.
Article
CAS
PubMed
Google Scholar
Baxter JD, Mayers DL, Wentworth DN, Neaton JD, Hoover ML, Winters MA, Mannheimer SB, Thompson MA, Abrams DI, Brizz BJ, Ioannidis JP, Merigan TC: A randomized study of antiretroviral management based on plasma genotypic antiretroviral resistance testing in patients failing therapy. AIDS. 2000, 14: F83-F93. 10.1097/00002030-200006160-00001.
Article
CAS
PubMed
Google Scholar
Cingolani A, Antinori A, Rizzo MG, Murri R, Ammassari A, Baldini F, Di Giambenedetto S, Cauda R, De Luca A: Usefulness of monitoring HIV drug resistance and adherence in individuals failing highly active antiretroviral therapy: a randomized study (ARGENTA). AIDS. 2002, 16: 369-79. 10.1097/00002030-200202150-00008.
Article
CAS
PubMed
Google Scholar
Durant J, Clevenbergh P, Garraffo R, Halfon P, Icard S, Del Giudice P, Montagne N, Schapiro JM, Dellamonica P: Drug-resistance genotyping in HIV-1 therapy: the VIRADAPT randomised controlled trial. The Lancet. 1999, 353: 2195-9. 10.1016/S0140-6736(98)12291-2.
Article
CAS
Google Scholar
Haupts S, Ledergerber B, Böni J, Schüpbach J, Kronenberg A, Opravil M, Flepp M, Speck RF, Grube C, Rentsch K, Weber R, Günthard HF, Swiss HIV Cohort Study: Impact of genotypic resistance testing on selection of salvage regimen in clinical practice. Antiviral therapy. 2003, 8: 443-54.
PubMed
Google Scholar
Sendi P, Gunthard HF, Simcock M, Ledergerber B, Schupbach J, Battegay M: Cost-Effectiveness of Genotypic Antiretroviral Resistance Testing in HIV-Infected Patients with Treatment Failure. PLoS ONE. 2007, 2: e173-10.1371/journal.pone.0000173.
Article
PubMed Central
PubMed
Google Scholar
Simcock M, Sendi P, Ledergerber B, Keller T, Schüpbach J, Battegay M, Günthard HF, Swiss HIV Cohort Study: A longitudinal analysis of healthcare costs after treatment optimization following genotypic antiretroviral resistance testing: does resistance testing pay off?. Antiviral therapy. 2006, 11: 305-14.
CAS
PubMed
Google Scholar
Tural C, Ruiz L, Holtzer C, Schapiro J, Viciana P, González J, Domingo P, Boucher C, Rey-Joly C, Clotet B: Clinical utility of HIV-1 genotyping and expert advice: the Havana trial. AIDS. 2002, 16: 209-18. 10.1097/00002030-200201250-00010.
Article
PubMed
Google Scholar
Cohen CJ, Hunt S, Sension M, Farthing C, Conant M, Jacobson S, Nadler J, Verbiest W, Hertogs K, Ames M, Rinehart AR, Graham NM: A randomized trial assessing the impact of phenotypic resistance testing on antiretroviral therapy. AIDS. 2002, 16: 579-88. 10.1097/00002030-200203080-00009.
Article
CAS
PubMed
Google Scholar
Hales G, Birch C, Crowe S, Workman C, Hoy JF, Law MG, Kelleher AD, Lincoln D, Emery S: A Randomised Trial Comparing Genotypic and Virtual Phenotypic Interpretation of HIV Drug Resistance: The CREST Study. PLoS clinical trials. 2006, 1: 18-e. 10.1371/journal.pctr.0010018.
Article
Google Scholar
Meynard JL, Vray M, Morand-Joubert L, Race E, Descamps D, Peytavin G, Matheron S, Lamotte C, Guiramand S, Costagliola D, Brun-Vézinet F, Clavel F, Girard PM, Narval Trial Group: Phenotypic or genotypic resistance testing for choosing antiretroviral therapy after treatment failure: a randomized trial. AIDS. 2002, 16: 727-36. 10.1097/00002030-200203290-00008.
Article
PubMed
Google Scholar
Wegner SA, Wallace MR, Aronson NE, Tasker SA, Blazes DL, Tamminga C, Fraser S, Dolan MJ, Stephan KT, Michael NL, Jagodzinski LL, Vahey MT, Gilcrest JL, Tracy L, Milazzo MJ, Murphy DJ, McKenna P, Hertogs K, Rinehart A, Larder B, Birx DL: Long-term efficacy of routine access to antiretroviral-resistance testing in HIV type 1-infected patients: results of the clinical efficacy of resistance testing trial. Clin Infect Dis. 2004, 38: 723-30. 10.1086/381266.
Article
PubMed
Google Scholar
Dunn DT, Green H, Loveday C, Rinehart A, Pillay D, Fisher M, McCormack S, Babiker AG, Darbyshire JH: A randomized controlled trial of the value of phenotypic testing in addition to genotypic testing for HIV drug resistance: evaluation of resistance assays (ERA) trial investigators. J Acquir Immune Defic Syndr. 2005, 38: 553-9. 10.1097/01.qai.0000148533.12329.96.
Article
CAS
PubMed
Google Scholar
Hirsch HH, Drechsler H, Holbro A, Hamy F, Sendi P, Petrovic K, Klimkait T, Battegay M: Genotypic and phenotypic resistance testing of HIV-1 in routine clinical care. European journal of clinical microbiology & infectious diseases. 2005, 24: 733-8. 10.1007/s10096-005-0044-4.
Article
CAS
Google Scholar
Swiss HIV Cohort Study: Ongoing multicenter research. [http://www.shcs.ch]
von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Battegay M, Furrer H, Telenti A, Hirschel B, Vernazza PL, Bernasconi E, Rickenbach M, Perrin L, Ledergerber B, Günthard HF: Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types. Arch Intern Med. 2007, 167: 1782-90. 10.1001/archinte.167.16.1782.
Article
CAS
PubMed
Google Scholar
Yerly S, Vora S, Rizzardi P, Chave JP, Vernazza PL, Flepp M, Telenti A, Battegay M, Veuthey AL, Bru JP, Rickenbach M, Hirschel B, Perrin L: Acute HIV infection: impact on the spread of HIV and transmission of drug resistance. AIDS. 2001, 15: 2287-92. 10.1097/00002030-200111230-00010.
Article
CAS
PubMed
Google Scholar
Klimkait T, Stauffer F, Lupo E, Sonderegger-Rubli C: Dissecting the mode of action of various HIV-inhibitor classes in a stable cellular system. Arch Virol. 1998, 143: 2109-31. 10.1007/s007050050447.
Article
CAS
PubMed
Google Scholar
Glass TR, Battegay M, Cavassini M, De Geest S, Furrer H, Vernazza PL, Hirschel B, Bernasconi E, Rickenbach M, Günthard HF, Bucher HC, Swiss HIV Cohort Study: Longitudinal analysis of patterns and predictors of changes in self-reported adherence to antiretroviral therapy: Swiss HIV Cohort Study. J Acquir Immune Defic Syndr. 2010, 54 (2): 197-203.
PubMed
Google Scholar
von Elm E, Altman DG, Egger M, Pocock SJ, Gotzsche PC, Vandenbroucke JP: Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies. BMJ. 2007, 335: 806-8. 10.1136/bmj.39335.541782.AD.
Article
PubMed Central
PubMed
Google Scholar
von Wyl V, Yerly S, Bürgisser P, Klimkait T, Battegay M, Bernasconi E, Cavassini M, Furrer H, Hirschel B, Vernazza PL, Francioli P, Bonhoeffer S, Ledergerber B, Günthard HF: Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clin Infect Dis. 2009, 48: 979-87. 10.1086/597352.
Article
PubMed
Google Scholar
Briones C, Domingo E: Minority report: hidden memory genomes in HIV-1 quasispecies and possible clinical implications. AIDS Rev. 2008, 10: 93-109.
PubMed
Google Scholar
Rozera G, Abbate I, Bruselles A, Vlassi C, D'Offizi G, Narciso P, Chillemi G, Prosperi M, Ippolito G, Capobianchi MR: Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations. Retrovirology. 2009, 6: 15-10.1186/1742-4690-6-15.
Article
PubMed Central
PubMed
Google Scholar
Snoeck J, Kantor R, Shafer RW, Van Laethem K, Deforche K, Carvalho AP, Wynhoven B, Soares MA, Cane P, Clarke J, Pillay C, Sirivichayakul S, Ariyoshi K, Holguin A, Rudich H, Rodrigues R, Bouzas MB, Brun-Vézinet F, Reid C, Cahn P, Brigido LF, Grossman Z, Soriano V, Sugiura W, Phanuphak P, Morris L, Weber J, Pillay D, Tanuri A, Harrigan RP, Camacho R, Schapiro JM, Katzenstein D, Vandamme AM: Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent. Antimicrob Agents Chemother. 2006, 50: 694-701. 10.1128/AAC.50.2.694-701.2006.
Article
PubMed Central
CAS
PubMed
Google Scholar