Table 1 Summary information of 10 TCGA cancers and the number of genes, sample sizes and SNPs of these cancers after combining the tissue in GTEx and quality control
Cancer | N0 | N1 | m | Age | Female/male | Censored rate (%) | Stage or grade (1/2/3/4/5) | Tissue in GTEx | N2 | k0 | k1 |
|---|---|---|---|---|---|---|---|---|---|---|---|
ACC | 97 | 75 | 4,473,001 | 47.6 ± 16.5 | 50/25 | 60.0 | 8/33/16/18/0 | Adrenal gland | 175 | 11,822 | 11,165 |
BRCA | 1283 | 736 | 2,281,892 | 58.8 ± 13.0 | 736/0 | 85.9 | 138/408/174/11/5 | Breast mammary tissue | 251 | 13,068 | 7,793 |
COAD | 570 | 201 | 4,216,239 | 66.0 ± 13.0 | 97/104 | 75.1 | 34/78/62/27/0 | Colon transverse | 246 | 12,779 | 11,586 |
LIHC | 469 | 166 | 3,369,784 | 62.7 ± 14.1 | 73/93 | 60.8 | 79/44/39/4/0 | Liver | 153 | 11,073 | 8,595 |
LUAD | 877 | 384 | 3,831,580 | 65.9 ± 9.9 | 213/171 | 63.0 | 216/90/62/16/0 | Lung | 383 | 13,300 | 10,617 |
LUSC | 765 | 344 | 3,279,532 | 67.1 ± 8.8 | 94/250 | 57.3 | 176/117/48/3/0 | Lung | 383 | 13,300 | 9,450 |
OV | 758 | 455 | 1,527,607 | 60.2 ± 11.4 | 455/0 | 37.4 | 9/19/353/74/0 | Ovary | 122 | 12,623 | 7,851 |
PAAD | 223 | 159 | 4,679,901 | 65.6 ± 10.8 | 69/90 | 45.9 | 20/130/4/5/0 | Pancreas | 220 | 11,173 | 10,728 |
STAD | 544 | 249 | 3,384,736 | 64.8 ± 10.2 | 97/152 | 60.2 | 33/75/128/13/0 | Stomach | 237 | 12,045 | 9,247 |
UCEC | 605 | 368 | 4,008,620 | 64.4 ± 10.8 | 368/0 | 83.2 | 239/33/79/17/0 | Uterus | 101 | 12,592 | 10,948 |