Table 1 Taxonomic classifiers used for long reads
From: Unraveling metagenomics through long-read sequencing: a comprehensive review
Name | Algorithm | Reference database | Developed year | LRS affinity |
|---|---|---|---|---|
MEGAN-LR [65] | Translation + LCA algorithm | NCBI nt | 2018 | ONT |
|  | Nucleotide + LCA algorithm | NCBI nt |  | ONT |
MMseq2 [66] | Translation + LCA algorithm | NCBI nt | 2017 | PacBio |
BugSeq-v2 [68] | Nucleotide + LCA algorithm | NCBI nt | 2021 | ONT |
CDKAM [69] | Approximate matching + kmer | NCBI nt | 2019 | ONT |
MetaMaps [70] | Approximate mapping + EM | Miniseq + H | 2016 | PacBio |