Gold standard or composite standard | mNGS | TP/FN score | TN/FP score |
---|---|---|---|
Positive for 1 organism | Positive for the identical organism | 1 TP | Â |
Positive for different organism(s) or negative | 1 FN | Â | |
Positive for 2 organisms | Positive for the 2 identical organisms | 1 TP | Â |
Positive for only 1 identical organism | 0.5 TP and 0.5 FN | Â | |
Positive for the different organism(s) or negative | 1 FN | Â | |
Positive for 3 organisms | Positive for the 3 identical organisms | 1 TP | Â |
Positive for only 2 identical organisms | 2/3 TP and 1/3 FN | Â | |
Positive for only 1 identical organism | 1/3 TP and 2/3 FN | Â | |
Positive for the different organism(s) or negative | 1 FN | Â | |
Positive for 4 organisms | Positive for the 4 identical organisms | 1 TP | Â |
Positive for only 3 identical organisms | 3/4 TP and 1/4 FN | Â | |
Positive for only 2 identical organisms | 2/4 TP and 2/4 FN | Â | |
Positive for only 1 identical organism | 1/4 TP and 3/4 FN | Â | |
Positive for the different organism(s) or negative | 1 FN | Â | |
Negative | Negative | Â | 1 TN |
Positive for any organism(s) | Â | 1 FP |