Fig. 2
From: Size matters: the impact of nucleus size on results from spatial transcriptomics
Results from spatial transcriptomics analysis using single tissue sections. A Top, histological image of orbitofrontal neocortex (ON) with marked white matter (WM) and grey matter (GM); Z1, zoomed-in image of the border between WM and GM; Z2, Blue arrow points to an oligodendrocyte nucleus; Z3, Black and Green arrows represent nuclei of neurons and astrocytes, respectively. In Z2 and Z3, white scale bars represent 10 µm. Bottom, unsupervised classification of spots. B The ST spots clustering before CSDI. C Label transferring before CSDI. The name of the sample encodes number of the section (P1/P2), number of slice (ON1/ON2), and patient id (A/B)