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Table 1 Correlation analysis between PROS1 and gene markers of immune cells in TIMER and GEPIA

From: LncRNA RP3-525N10.2-NFKB1-PROS1 triplet-mediated low PROS1 expression is an onco-immunological biomarker in low-grade gliomas: a pan-cancer analysis with experimental verification

Immune cell

Biomarker

TIMER

GEPIA

R value

p value

R value

p value

B cell

CD19

0.20***

7.11E − 06

0.24***

4.2E − 08

CD79A

0.11*

1.46E − 02

0.16***

2.3E − 04

T cell

CD3D

0.38***

1.01E − 18

0.34***

1E − 15

CD3E

0.39***

2.59E − 20

0.41***

6.4E − 22

CD2

0.44***

1.93E − 26

0.47***

2.6E − 30

CD8 + T cell

CD8A

0.19***

9.38E − 06

0.22***

2.9E − 07

CD8B

0.18***

2.95E − 05

0.21***

1.9E − 06

CD4 + T cell

CD4

0.41***

6.8E − 12

0.41***

6.8E − 22

Monocyte

CD86

0.33***

8.38E − 15

0.36***

3.1E − 17

CSF1R

0.21***

1.55E − 06

0.23***

1.2E − 07

TAM (general)

CCL2

0.35***

6.00E − 16

0.35***

4.5E − 16

CD68

0.42***

3.5E − 25

0.43***

3.5E − 25

IL10

0.34***

4.17E − 15

0.37***

1.1E − 18

M1

IRF5

0.30***

5.12E − 12

0.31***

3.7E − 13

PTGS2

0.04*

3.87E − 02

0.091**

3.9E − 02

NOS2

 − 0.13**

2.3E − 03

 − 0.11**

1.4E − 02

M2

CD163

0.45***

4.3E − 24

0.42***

4.3E − 24

VSIG4

0.30***

8.18E − 12

0.31***

2.5E − 13

MS4A4A

0.44***

2.8E − 29

0.47***

2.8E − 29

Neutrophils

CEACAM8

 − 0.01

8.2E − 01

0.0019

9.7E − 01

ITGAM

0.28***

8.97E − 11

0.29***

8.6E − 12

CCR7

0.33***

3.68E − 14

0.34***

6.8E − 16

Natural killer cell

KIR2DL1

0.12**

5.1E − 03

0.16***

2.7E − 04

KIR2DL3

0.22***

3.79E − 07

0.25***

1.2E − 08

KIR2DL4

0.23***

8.55E − 08

0.28***

1.8E − 10

KIR3DL1

0.11*

1.3E − 02

0.16***

3E − 04

KIR3DL2

0.10*

1.9E − 02

0.17***

1.3E − 04

KIR3DL3

0.01

9.7E − 01

0.019

6.6E − 01

KIR2DS4

0.18***

3.52E − 05

0.19***

1.1E − 05

Dendritic cell

HLA-DPB1

0.49***

1.6E − 33

0.5***

1.6E − 33

HLA-DQB1

0.42***

6.5E − 15

0.33***

6.5E − 15

HLA-DRA

0.52***

4.6E − 38

0.53***

4.6E − 38

HLA-DPA1

0.52***

7.7E − 38

0.52***

7.7E − 38

CD1C

0.36***

8.18E − 17

0.34***

8.2E − 16

NRP1

0.49***

3.43E − 33

0.5***

1.5E − 34

ITGAX

0.23***

1.51E − 07

0.23***

1.2E − 07

Microglia

CX3CR1

0.216***

7.78E − 07

0.23***

1.6E − 07

P2RY12

0.075

8,75E − 02

0.1

0.02

ITGAX

0.229***

1.51E − 07

0.23***

1.2E − 07

FCGR1A

0.29***

2.34E − 11

0.26***

3.9E − 09

TMEM119

0.205***

2.6E − 06

0.23***

6.3E − 08

CD33

0.331***

1.25E − 14

0.32***

1E − 13

Monocyte-derived Macrophages

MRC1

 − 0.099

2.4E − 02

 − 0.061

0.16

CD163

0.45***

P < 0.001

0.42***

4.3E − 24

CD14

0.362***

1.23E − 17

0.38***

7.2E − 19

TEK

 − 0.033

4.49E − 01

0.0087

0.84

THBD

0.249***

1.14E − 08

0.29***

3.7E − 11

ICAM1

0.429***

1.69E − 24

0.44***

2.2E − 26

ITGA4

0.47***

P < 0.001

0.49***

1.4E − 32

  1. *p < 0.05, **p < 0.01, ***p < 0.001