Fig. 3

Co-differentially-expressed patterns of lincRNA genomic clusters in different cancer types. (A) Heatmap of differential expression among all clustered lincRNA in each cancer type. The color indicates different logFC (log2foldchange) values for lincRNAs from limma. Rows are arranged in the order of lincRNA genomic clusters. (B) Heatmap plot of significantly different expression of lincRNAs in co-differentially-expressed cluster in KICH. (C) The proportion of lincRNA in cluster which were differentially-expressed. (D) Annotation bars represent GO terms enriched for unique lincRNA genomic clusters ranked by P-value. The different colors showing the P-value of enrichment. (E) GO terms enriched for common lincRNA genomic clusters ranked by P-value are presented as bubble plots. The different colors showing the P-value of enrichment