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Table 1 Associations of Immunotype Scores and immune cell homing (ICH) gene expression levels for tumor subsets. Correlation coefficients (r values) calculated by the Spearman rank test. PTPRC gene used to represent CD45+ immune cells for comparison

From: Associations of immune cell homing gene signatures and infiltrates of lymphocyte subsets in human melanomas: discordance with CD163+ myeloid cell infiltrates

 

N (%)

PTPRC (CD45)

CXCL9

CCL5

CXCL13

r value (95% CI)

p value

r value (95% CI)

p value

r value (95% CI)

p value

r value (95% CI)

p value

All Tumors

119

0.32 (0.14–0.47)

0.0005

0.53 (0.38–0.65)

 < 0.0001

0.52 (0.37–0.64)

 < 0.0001

0.44 (0.28–0.58)

 < 0.0001

Tumor type

 Primary

7 (6%)

− 0.39

0.38

0.77

0.06

0.56

0.2

0.17

0.73

 Metastatic

112 (94%)

0.32 (0.14–0.48)

0.0006

0.52 (0.36–0.65)

 < 0.0001

0.51 (0.36–0.64)

 < 0.0001

0.46 (0.29–0.6)

 < 0.0001

Metastatic sites

 Skin/subcutaneous

64 (57%)

0.22 (− 0.04–0.45)

0.08

0.52 (0.3–0.68)

 < 0.0001

0.58 (0.38–0.72)

 < 0.0001

0.42 (0.19–0.61)

0.0005

 Lymph Node

41 (37%)

0.39 (0.08–0.63)

0.01

0.46 (0.16–0.68)

0.003

0.4 (0.1–0.64)

0.009

0.48 (0.19–0.69)

0.001

 Abdomen

7 (6%)

0.54

0.21

0.62

0.15

0.84

0.024

0.62

0.15

Tumors with heterogeneity in immune infiltrates

 Heterogenous TMA Cores

7 (42%)

0.48 (0.23–0.68)

0.0004

0.52 (0.27–0.7)

0.0001

0.55 (0.31–0.72)

 < 0.0001

0.45 (0.18–0.65)

0.001

  1. 95% CI 95% confidence interval, TMA tissue microarray