From: TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository
Distance matrix
TPM (Fig. 1A)
CountDEseq2 (Fig. 1B)
CountTMM (Additional file 1: Figure S1A)
FPKM (Additional file 1: Figure S1B)
TPM-Zscore (Additional file 1: Figure S1C)
TPM-TMM (Additional file 1: Figure S3A)
1-Pearson
1/20
0
Euclidean
4/20
6/20
