Table 1 Interaction of miRNA and mRNA in SLE patients
miRNA_ID | miRNA_log FC2 | miRNA_Regulation | Target mRNA_ID | Target mRNA gene symbol | Target mRNA_log FC2 | Target mRNA_Regulation |
|---|---|---|---|---|---|---|
all_hsa-miR-1260a | NA# | Down | ENST00000367696 | RC3H1 | 2.162 | Up |
NovelmiRNA-72 | NA | Down | ENST00000361776 | FOXJ3 | 9.087 | Up |
ENST00000369248 | FAM160B1 | Inf | ||||
ENST00000335515 | PRICKLE4 | Inf | ||||
ENST00000431061 | ELL2 | 5.190 | ||||
ENST00000314330 | C9orf139 | 2.595 | ||||
ENST00000436936 | NLRC5 | Inf | ||||
ENST00000426335 | ARFGAP2 | 5.775 | ||||
ENST00000315588 | MED29 | Inf | ||||
ENST00000531165 | CELF1 | Inf | ||||
ENST00000532415 | PKD1P5 | 4.679 | ||||
ENST00000578036 | PLEKHM1P | Inf | ||||
all_hsa-miR-4470 | Inf* | Up | ENST00000406337 | KAT6A | − 2.213 | Down |
NovelmiRNA-798 | Inf | Up | ENST00000374282 | PAFAH2 | − 6.846 | Down |
all_hsa-miR-150-5p | − 1.523 | Down | ENST00000304363 | SUV420H1 | Inf | Up |
ENST00000354670 | BMF | Inf | ||||
NovelmiRNA-376 | NA | Down | ENST00000335934 | TP53I3 | 4.654 | Up |
ENST00000394519 | RNF14 | 4.642 | ||||
ENST00000354670 | BMF | Inf | ||||
ENST00000254654 | ILKAP | Inf | ||||
all_hsa-miR-330-5p | 1.469 | Up | ENST00000438423 | TCF12 | − 1.990 | Down |
ENST00000442101 | ELF1 | − 2.653 | ||||
ENST00000518421 | AP3M2 | − 2.599 | ||||
ENST00000566433 | ADCY7 | − 4.518 | ||||
all_hsa-miR-874-5p | − 1.713 | Down | ENST00000360121 | SPN | 2.820 | Up |
ENST00000535612 | ARMC6 | Inf | ||||
ENST00000316509 | VAMP2 | Inf | ||||
ENST00000335515 | PRICKLE4 | Inf | ||||
ENST00000588731 | SUGP1 | 3.932 | ||||
ENST00000354329 | MYO18A | Inf | ||||
ENST00000388995 | FAM83G | Inf | ||||
ENST00000528896 | KIAA0100 | Inf | ||||
ENST00000242351 | ZC3HAV1 | Inf | ||||
ENST00000378387 | ARHGEF39 | 4.053 | ||||
ENST00000313028 | PARP10 | Inf | ||||
ENST00000495880 | DUSP7 | 2.318 | ||||
ENST00000449969 | PLCH2 | Inf | ||||
ENST00000562522 | ITGAX | Inf | ||||
ENST00000492450 | ZNF181 | Inf | ||||
ENST00000442312 | SH3BP2 | Inf | ||||
ENST00000314330 | C9orf139 | 2.595 | ||||
ENST00000453547 | ARHGAP19-SLIT1 | 5.478 | ||||
ENST00000311895 | ERCC4 | Inf | ||||
ENST00000397527 | CEP250 | 3.423 | ||||
ENST00000436936 | NLRC5 | Inf | ||||
ENST00000325722 | KIAA0319L | 4.037 | ||||
ENST00000251582 | ADAMTS2 | 9.369 | ||||
ENST00000447018 | CCDC51 | 5.414 | ||||
ENST00000373130 | STK40 | Inf | ||||
ENST00000589297 | CYTH1 | 5.446 | ||||
ENST00000374134 | RGS3 | 2.658 | ||||
ENST00000578036 | PLEKHM1P | Inf | ||||
all_hsa-miR-342-5p | − 1.303 | Down | ENST00000356187 | RNH1 | Inf | Up |
all_hsa-miR-106b-3p | Inf | Up | ENST00000295760 | FBLN2 | -5.518 | Down |
NovelmiRNA-815 | NA | Down | ENST00000378387 | ARHGEF39 | 4.053 | Up |
ENST00000347230 | ZFYVE26 | Inf | ||||
ENST00000357867 | FN1 | Inf | ||||
ENST00000315588 | MED29 | Inf | ||||
ENST00000375759 | SPEN | Inf | ||||
ENST00000450305 | DDX11L1 | Inf | ||||
NovelmiRNA-288 | NA | Down | ENST00000449969 | PLCH2 | Inf | Up |
ENST00000453547 | ARHGAP19-SLIT1 | 5.478 | ||||
ENST00000346169 | EIF4G1 | 2.275 | ||||
all_hsa-miR-7854-3p | 1.704 | Up | ENST00000310826 | ZBTB21 | − 4.660 | Down |
ENST00000331222 | CLN8 | NA | ||||
ENST00000220597 | PAG1 | − 2.120 | ||||
ENST00000426496 | PRRC2C | − 3.820 | ||||
NovelmiRNA-983 | Inf | Up | ENST00000416476 | BBX | − 2.929 | Down |
NovelmiRNA-489 | Inf | Up | ENST00000339562 | NR4A2 | − 2.229 | Down |
ENST00000570054 | RP11-343C2.11 | NA | ||||
NovelmiRNA-862 | NA | Down | ENST00000348428 | MALT1 | 7.635 | Up |
ENST00000555447 | STON2 | 2.385 | ||||
ENST00000450053 | NBEAL2 | 6.383 | ||||
ENST00000314330 | C9orf139 | 2.595 | ||||
ENST00000264033 | CBL | 4.351 | ||||
ENST00000361842 | XAF1 | 2.457 | ||||
ENST00000346169 | EIF4G1 | 2.275 | ||||
ENST00000526177 | GDPD5 | 5.050 | ||||
ENST00000301202 | LAIR2 | 2.836 | ||||
NovelmiRNA-30 | Inf | Up | ENST00000491381 | SNX21 | − -4.412 | Down |
ENST00000398246 | LONRF1 | − 2.309 | ||||
ENST00000597188 | ADAMTS10 | NA | ||||
ENST00000243077 | LRP1 | NA | ||||
ENST00000380746 | DNMT3A | NA | ||||
ENST00000372269 | FAM78A | − 3.099 | ||||
ENST00000257247 | AHNAK | NA | ||||
ENST00000427718 | FBXO21 | NA | ||||
ENST00000228862 | DUSP16 | − 3.062 | ||||
ENST00000544627 | ATF7IP | − 1.915 | ||||
ENST00000409645 | MGAT5 | − 1.996 | ||||
all_hsa-miR-3150a-5p | 2.297 | Up | ENST00000525038 | C11orf30 | NA | Down |
all_hsa-miR-361-5p | − 1.103 | Down | ENST00000342624 | TMTC4 | 7.110 | Up |
ENST00000539778 | CMIP | 3.559 | ||||
ENST00000526177 | GDPD5 | 5.050 | ||||
ENST00000375759 | SPEN | Inf | ||||
ENST00000267079 | MAP3K12 | Inf | ||||
NovelmiRNA-426 | Inf | Up | ENST00000371030 | ZNF831 | − 3.221 | Down |
ENST00000251268 | MEGF8 | NA | ||||
ENST00000304987 | SIK2 | − 2.195 | ||||
ENST00000243077 | LRP1 | NA | ||||
ENST00000262518 | SRCAP | − 3.718 | ||||
ENST00000418048 | CSF3R | NA | Down | |||
all_hsa-miR-1273Â h-5p | 1.169 | Up | ENST00000367080 | PFKFB2 | NA | Down |
ENST00000552810 | CEP290 | − 5.056 | ||||
ENST00000264951 | XRN1 | NA | ||||
ENST00000589042 | TTN | − 2.833 | ||||
ENST00000397708 | MCM3AP | − 2.945 | ||||
ENST00000409993 | DPAGT1 | NA | ||||
ENST00000544583 | ABR | NA | ||||
ENST00000394961 | SMARCAD1 | − 2.347 | ||||
ENST00000358583 | GOLGA6L20 | NA | ||||
ENST00000536441 | SESN3 | − 3.579 | ||||
all_hsa-miR-92b-5p | 1.213 | Up | ENST00000258886 | IREB2 | − 5.167 | Down |
NovelmiRNA-92 | NA | Down | ENST00000301749 | NLRC3 | Inf | Up |
ENST00000407690 | TFIP11 | 3.053 | ||||
ENST00000266564 | PEX5 | Inf | ||||
ENST00000309955 | CFLAR | Inf | ||||
ENST00000296603 | LMBRD2 | 3.287 | ||||
ENST00000380743 | SMN2 | 3.576 | ||||
ENST00000417961 | SLC9A8 | 3.225 | ||||
ENST00000495880 | DUSP7 | 2.318 | ||||
ENST00000396832 | CSNK1E | Inf | ||||
ENST00000393667 | GOLGB1 | Inf | ||||
ENST00000344138 | GRAP2 | 4.341 | ||||
ENST00000450053 | NBEAL2 | 6.383 | ||||
ENST00000314330 | C9orf139 | 2.595 | ||||
ENST00000461206 | ST3GAL5 | 4.203 | ||||
ENST00000401949 | GRB10 | 3.459 | ||||
ENST00000373823 | GSN | Inf | ||||
ENST00000393265 | SLC24A4 | 2.727 | Up | |||
all_hsa-miR-503-5p | 1.246 | Up | ENST00000595840 | LRRC25 | − 2.304 | Down |
all_hsa-miR-6716-5p | Inf | Up | ENST00000493114 | IRF4 | − 4.622 | Down |
NovelmiRNA-296 | Inf | Up | ENST00000374152 | ARID1A | NA | Down |
ENST00000369393 | MDN1 | − 2.000 | ||||
NovelmiRNA-49 | Inf | Up | ENST00000344028 | CD6 | − 2.367 | Down |
ENST00000589042 | TTN | − 2.833 | ||||
ENST00000418265 | ISY1-RAB43 | NA | ||||
NovelmiRNA-25 | 2.337 | Up | ENST00000417379 | AATK | NA | Down |
ENST00000394378 | SYNRG | NA | ||||
ENST00000254605 | RRP8 | NA | ||||
ENST00000528667 | AMPD2 | − 2.912 | ||||
NovelmiRNA-974 | Inf | Up | ENST00000450123 | BCL6 | NA | Down |
ENST00000426496 | PRRC2C | − 3.820 |