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Table 1 Interaction of miRNA and mRNA in SLE patients

From: NovelmiRNA-25 inhibits AMPD2 in peripheral blood mononuclear cells of patients with systemic lupus erythematosus and represents a promising novel biomarker

miRNA_ID miRNA_log FC2 miRNA_Regulation Target mRNA_ID Target mRNA gene symbol Target mRNA_log FC2 Target mRNA_Regulation
all_hsa-miR-1260a NA# Down ENST00000367696 RC3H1 2.162 Up
NovelmiRNA-72 NA Down ENST00000361776 FOXJ3 9.087 Up
ENST00000369248 FAM160B1 Inf
ENST00000335515 PRICKLE4 Inf
ENST00000431061 ELL2 5.190
ENST00000314330 C9orf139 2.595
ENST00000436936 NLRC5 Inf
ENST00000426335 ARFGAP2 5.775
ENST00000315588 MED29 Inf
ENST00000531165 CELF1 Inf
ENST00000532415 PKD1P5 4.679
ENST00000578036 PLEKHM1P Inf
all_hsa-miR-4470 Inf* Up ENST00000406337 KAT6A − 2.213 Down
NovelmiRNA-798 Inf Up ENST00000374282 PAFAH2 − 6.846 Down
all_hsa-miR-150-5p − 1.523 Down ENST00000304363 SUV420H1 Inf Up
ENST00000354670 BMF Inf
NovelmiRNA-376 NA Down ENST00000335934 TP53I3 4.654 Up
ENST00000394519 RNF14 4.642
ENST00000354670 BMF Inf
ENST00000254654 ILKAP Inf
all_hsa-miR-330-5p 1.469 Up ENST00000438423 TCF12 − 1.990 Down
ENST00000442101 ELF1 − 2.653
ENST00000518421 AP3M2 − 2.599
ENST00000566433 ADCY7 − 4.518
all_hsa-miR-874-5p − 1.713 Down ENST00000360121 SPN 2.820 Up
ENST00000535612 ARMC6 Inf
ENST00000316509 VAMP2 Inf
ENST00000335515 PRICKLE4 Inf
ENST00000588731 SUGP1 3.932
ENST00000354329 MYO18A Inf
ENST00000388995 FAM83G Inf
ENST00000528896 KIAA0100 Inf
ENST00000242351 ZC3HAV1 Inf
ENST00000378387 ARHGEF39 4.053
ENST00000313028 PARP10 Inf
ENST00000495880 DUSP7 2.318
ENST00000449969 PLCH2 Inf
ENST00000562522 ITGAX Inf
ENST00000492450 ZNF181 Inf
ENST00000442312 SH3BP2 Inf
ENST00000314330 C9orf139 2.595
ENST00000453547 ARHGAP19-SLIT1 5.478
ENST00000311895 ERCC4 Inf
ENST00000397527 CEP250 3.423
ENST00000436936 NLRC5 Inf
ENST00000325722 KIAA0319L 4.037
ENST00000251582 ADAMTS2 9.369
ENST00000447018 CCDC51 5.414
ENST00000373130 STK40 Inf
ENST00000589297 CYTH1 5.446
ENST00000374134 RGS3 2.658
ENST00000578036 PLEKHM1P Inf
all_hsa-miR-342-5p − 1.303 Down ENST00000356187 RNH1 Inf Up
all_hsa-miR-106b-3p Inf Up ENST00000295760 FBLN2 -5.518 Down
NovelmiRNA-815 NA Down ENST00000378387 ARHGEF39 4.053 Up
ENST00000347230 ZFYVE26 Inf
ENST00000357867 FN1 Inf
ENST00000315588 MED29 Inf
ENST00000375759 SPEN Inf
ENST00000450305 DDX11L1 Inf
NovelmiRNA-288 NA Down ENST00000449969 PLCH2 Inf Up
ENST00000453547 ARHGAP19-SLIT1 5.478
ENST00000346169 EIF4G1 2.275
all_hsa-miR-7854-3p 1.704 Up ENST00000310826 ZBTB21 − 4.660 Down
ENST00000331222 CLN8 NA
ENST00000220597 PAG1 − 2.120
ENST00000426496 PRRC2C − 3.820
NovelmiRNA-983 Inf Up ENST00000416476 BBX − 2.929 Down
NovelmiRNA-489 Inf Up ENST00000339562 NR4A2 − 2.229 Down
ENST00000570054 RP11-343C2.11 NA
NovelmiRNA-862 NA Down ENST00000348428 MALT1 7.635 Up
ENST00000555447 STON2 2.385
ENST00000450053 NBEAL2 6.383
ENST00000314330 C9orf139 2.595
ENST00000264033 CBL 4.351
ENST00000361842 XAF1 2.457
ENST00000346169 EIF4G1 2.275
ENST00000526177 GDPD5 5.050
ENST00000301202 LAIR2 2.836
NovelmiRNA-30 Inf Up ENST00000491381 SNX21 − -4.412 Down
ENST00000398246 LONRF1 − 2.309
ENST00000597188 ADAMTS10 NA
ENST00000243077 LRP1 NA
ENST00000380746 DNMT3A NA
ENST00000372269 FAM78A − 3.099
ENST00000257247 AHNAK NA
ENST00000427718 FBXO21 NA
ENST00000228862 DUSP16 − 3.062
ENST00000544627 ATF7IP − 1.915
ENST00000409645 MGAT5 − 1.996
all_hsa-miR-3150a-5p 2.297 Up ENST00000525038 C11orf30 NA Down
all_hsa-miR-361-5p − 1.103 Down ENST00000342624 TMTC4 7.110 Up
ENST00000539778 CMIP 3.559
ENST00000526177 GDPD5 5.050
ENST00000375759 SPEN Inf
ENST00000267079 MAP3K12 Inf
NovelmiRNA-426 Inf Up ENST00000371030 ZNF831 − 3.221 Down
ENST00000251268 MEGF8 NA
ENST00000304987 SIK2 − 2.195
ENST00000243077 LRP1 NA
ENST00000262518 SRCAP − 3.718
ENST00000418048 CSF3R NA Down
all_hsa-miR-1273 h-5p 1.169 Up ENST00000367080 PFKFB2 NA Down
ENST00000552810 CEP290 − 5.056
ENST00000264951 XRN1 NA
ENST00000589042 TTN − 2.833
ENST00000397708 MCM3AP − 2.945
ENST00000409993 DPAGT1 NA
ENST00000544583 ABR NA
ENST00000394961 SMARCAD1 − 2.347
ENST00000358583 GOLGA6L20 NA
ENST00000536441 SESN3 − 3.579
all_hsa-miR-92b-5p 1.213 Up ENST00000258886 IREB2 − 5.167 Down
NovelmiRNA-92 NA Down ENST00000301749 NLRC3 Inf Up
ENST00000407690 TFIP11 3.053
ENST00000266564 PEX5 Inf
ENST00000309955 CFLAR Inf
ENST00000296603 LMBRD2 3.287
ENST00000380743 SMN2 3.576
ENST00000417961 SLC9A8 3.225
ENST00000495880 DUSP7 2.318
ENST00000396832 CSNK1E Inf
ENST00000393667 GOLGB1 Inf
ENST00000344138 GRAP2 4.341
ENST00000450053 NBEAL2 6.383
ENST00000314330 C9orf139 2.595
ENST00000461206 ST3GAL5 4.203
ENST00000401949 GRB10 3.459
ENST00000373823 GSN Inf
ENST00000393265 SLC24A4 2.727 Up
all_hsa-miR-503-5p 1.246 Up ENST00000595840 LRRC25 − 2.304 Down
all_hsa-miR-6716-5p Inf Up ENST00000493114 IRF4 − 4.622 Down
NovelmiRNA-296 Inf Up ENST00000374152 ARID1A NA Down
ENST00000369393 MDN1 − 2.000
NovelmiRNA-49 Inf Up ENST00000344028 CD6 − 2.367 Down
ENST00000589042 TTN − 2.833
ENST00000418265 ISY1-RAB43 NA
NovelmiRNA-25 2.337 Up ENST00000417379 AATK NA Down
ENST00000394378 SYNRG NA
ENST00000254605 RRP8 NA
ENST00000528667 AMPD2 − 2.912
NovelmiRNA-974 Inf Up ENST00000450123 BCL6 NA Down
ENST00000426496 PRRC2C − 3.820
  1. NA#: only expressed in normal controls; Inf*: only expressed in SLE patients