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Table 2 Differentially gene expression in the TGFβ-signaling pathway

From: The TGFβ-signaling pathway and colorectal cancer: associations between dysregulated genes and miRNAs

Gene name

Tumor mean

Tumor SD

Normal mean

Normal SD

Fold change

(95% CI)

Adjusted P value

% FC < 0.67

% FC > 1.5

BMP5

3.93

0.30

22.50

1.61

0.17

(0.14, 0.21)

3.54E−39

84.3

3.7

BMP6

4.29

0.31

17.05

1.06

0.25

(0.21, 0.30)

2.55E−35

77.4

4.1

IFNG

0.78

0.12

2.48

0.31

0.32

(0.22, 0.45)

2.10E−09

47.0

3.7

BMP2

20.73

1.04

64.78

2.92

0.32

(0.28, 0.36)

2.85E−41

81.1

4.1

CDKN2B

24.21

1.23

74.65

3.43

0.32

(0.29, 0.37)

1.57E−41

80.2

6.0

GDF7

1.48

0.14

3.63

0.30

0.41

(0.32, 0.51)

9.55E−13

55.3

7.8

AMHR2

0.16

0.05

0.38

0.12

0.43

(0.24, 0.78)

7.72E−03

18.4

1.8

LEFTY2

0.68

0.14

1.57

0.32

0.43

(0.31, 0.60)

2.11E−06

34.1

7.4

ACVR1C

7.52

0.45

14.84

0.89

0.51

(0.43, 0.60)

2.99E−13

64.1

10.6

LEFTY1

32.87

3.41

64.73

5.42

0.51

(0.40, 0.65)

1.84E−07

61.3

15.7

FST

1.87

0.20

3.18

0.36

0.59

(0.45, 0.76)

1.21E−04

37.8

6.9

GDF6

0.86

0.12

1.46

0.22

0.59

(0.42, 0.83)

3.37E−03

30.4

6.5

THBS1

585.51

23.55

881.12

35.29

0.66

(0.61, 0.72)

1.76E−17

50.7

10.1

MAPK3

62.34

2.09

92.73

3.04

0.67

(0.62, 0.73)

4.62E−18

50.7

6.9

SMAD1

27.03

0.89

36.99

1.22

0.73

(0.67, 0.80)

1.75E−11

46.1

9.2

CHRD

6.54

0.44

8.90

0.59

0.73

(0.62, 0.87)

4.89E−04

41.9

15.7

SMAD4

89.84

2.47

119.48

3.27

0.75

(0.71, 0.80)

3.59E−16

37.8

5.5

SMAD7

31.79

1.14

40.98

1.46

0.78

(0.70, 0.85)

1.05E−06

41.0

15.7

SMAD9

26.96

1.61

34.30

1.95

0.79

(0.68, 0.91)

1.62E−03

49.3

19.8

ZFYVE9

50.10

1.37

62.66

1.71

0.80

(0.74, 0.86)

2.93E−08

38.7

7.4

ID3

31.30

1.51

38.32

1.79

0.82

(0.73, 0.91)

6.80E−04

43.3

18.4

SMAD2

161.37

4.37

194.68

5.24

0.83

(0.78, 0.88)

4.56E−09

33.6

8.8

ACVR1B

94.45

2.49

112.99

2.93

0.84

(0.78, 0.90)

1.88E−06

35.9

10.1

NBL1

181.16

5.41

213.28

6.34

0.85

(0.80, 0.91)

4.56E−06

33.6

10.6

SMAD3

106.05

2.59

124.63

3.00

0.85

(0.80, 0.91)

2.27E−06

28.1

9.2

PPP2CB

55.72

1.63

65.30

1.88

0.85

(0.79, 0.92)

8.37E−05

35.5

12.4

EP300

293.90

3.99

339.29

4.67

0.87

(0.84, 0.90)

8.90E−14

16.6

3.2

RPS6KB2

35.48

0.90

40.51

1.06

0.88

(0.82, 0.93)

1.16E−04

28.6

14.3

ACVR2A

39.04

1.43

43.73

1.60

0.89

(0.82, 0.98)

1.70E−02

28.6

16.6

RBX1

20.82

0.70

23.31

0.83

0.89

(0.82, 0.97)

1.35E−02

29.0

17.5

BMP8B

21.66

0.75

24.25

0.87

0.89

(0.81, 0.98)

2.30E−02

35.0

20.7

NODAL

2.36

0.20

2.63

0.23

0.90

(0.71, 1.14)

4.10E−01

35.0

11.5

INHBE

0.80

0.10

0.86

0.12

0.93

(0.67, 1.30)

7.08E−01

28.1

5.5

TNF

1.95

0.20

2.04

0.25

0.96

(0.72, 1.27)

7.71E−01

26.3

10.1

CREBBP

264.23

3.97

273.44

4.17

0.97

(0.93, 1.00)

7.19E−02

8.3

5.5

ROCK1

143.22

3.87

148.19

4.03

0.97

(0.91, 1.02)

2.61E−01

19.4

15.2

DCN

73.70

4.09

75.88

3.96

0.97

(0.84, 1.12)

7.08E−01

38.2

28.1

GDF5

0.19

0.06

0.20

0.06

0.99

(0.58, 1.70)

9.72E−01

14.7

3.2

ZFYVE16

102.11

2.67

101.55

2.72

1.01

(0.95, 1.07)

8.66E−01

15.2

19.4

MAPK1

183.50

3.04

179.79

3.01

1.02

(0.98, 1.07)

3.91E−01

6.5

10.1

TGFB1

41.60

1.76

39.64

1.64

1.05

(0.94, 1.17)

3.99E−01

33.2

29.0

SMURF1

112.79

2.32

106.62

2.22

1.06

(1.00, 1.12)

4.85E−02

11.1

20.7

PPP2R1B

81.03

1.94

76.22

1.88

1.06

(1.00, 1.13)

5.57E−02

11.1

16.6

SP1

287.39

4.77

266.86

4.51

1.08

(1.03, 1.12)

4.71E−04

5.5

10.6

ID2

26.59

1.11

24.40

1.03

1.09

(0.98, 1.22)

1.41E−01

25.8

31.8

TGFBR2

197.09

4.95

178.93

4.49

1.10

(1.03, 1.18)

7.47E−03

18.9

28.6

PPP2R1A

142.03

2.87

127.10

2.65

1.12

(1.07, 1.17)

1.18E−05

8.3

18.9

BMPR1A

20.81

0.79

18.58

0.74

1.12

(1.01, 1.24)

3.21E−02

21.2

26.7

SKP1

91.51

2.16

81.23

1.97

1.13

(1.06, 1.19)

1.28E−04

12.0

20.3

PPP2CA

101.95

2.74

90.28

2.47

1.13

(1.06, 1.20)

1.85E−04

10.6

21.7

BMPR1B

3.21

0.39

2.83

0.35

1.13

(0.85, 1.51)

4.18E−01

27.6

11.5

TGFB3

16.83

0.94

14.40

0.78

1.17

(1.01, 1.35)

4.71E−02

31.3

31.3

ACVR1

33.10

0.98

28.22

0.88

1.17

(1.08, 1.28)

4.18E−04

15.7

36.4

ID4

13.08

0.76

11.09

0.67

1.18

(1.00, 1.39)

6.14E−02

31.8

32.7

ID1

53.99

3.59

45.77

2.69

1.18

(1.00, 1.39)

5.57E−02

37.3

33.2

PITX2

11.58

1.16

9.64

0.99

1.20

(0.90, 1.59)

2.34E−01

23.0

26.7

RPS6KB1

49.77

1.39

41.07

1.18

1.21

(1.13, 1.30)

4.70E−07

8.8

27.6

BMP8A

5.36

0.39

4.37

0.33

1.23

(1.03, 1.46)

2.56E−02

28.6

25.3

E2F4

71.86

1.84

58.20

1.54

1.23

(1.17, 1.31)

1.97E−11

10.6

32.3

ACVR2B

14.96

0.59

12.09

0.52

1.24

(1.12, 1.36)

3.44E−05

20.3

36.9

BMPR2

219.08

5.39

176.91

4.38

1.24

(1.17, 1.32)

1.08E−10

10.6

30.4

LTBP1

77.75

2.98

61.80

2.43

1.26

(1.13, 1.40)

7.76E−05

23.0

36.9

SMAD6

21.19

0.93

16.42

0.78

1.29

(1.15, 1.44)

2.26E−05

18.4

39.6

SMAD5

124.87

3.71

94.20

2.84

1.33

(1.24, 1.41)

3.30E−15

8.8

35.5

SMURF2

51.22

1.61

38.21

1.27

1.34

(1.24, 1.45)

1.04E−11

11.1

39.6

RHOA

282.98

5.14

209.50

3.91

1.35

(1.29, 1.42)

4.34E−26

3.7

39.6

CUL1

74.71

1.95

53.22

1.45

1.40

(1.31, 1.50)

9.04E−19

6.5

40.1

E2F5

46.80

1.65

30.87

1.18

1.52

(1.38, 1.67)

3.20E−15

11.5

48.4

TGFBR1

106.44

3.40

70.13

2.27

1.52

(1.40, 1.65)

3.31E−18

6.5

50.7

TGIF1

81.12

2.46

50.35

1.61

1.61

(1.49, 1.75)

7.21E−24

8.3

55.3

AMH

5.92

0.63

3.39

0.36

1.74

(1.37, 2.22)

1.63E−05

27.6

28.1

BAMBI

9.61

0.80

5.20

0.46

1.85

(1.48, 2.30)

2.72E−07

25.8

32.3

INHBB

5.87

0.55

3.08

0.30

1.91

(1.52, 2.39)

1.43E−07

22.1

30.4

TGFB2

9.23

0.60

4.52

0.34

2.04

(1.71, 2.44)

2.96E−13

16.1

37.8

BMP4

48.63

2.94

22.37

1.33

2.17

(1.88, 2.52)

6.72E−20

13.8

53.0

TFDP1

119.20

3.35

54.04

1.61

2.21

(2.03, 2.39)

1.55E−47

3.2

76.5

RBL1

53.52

1.98

23.32

0.93

2.30

(2.08, 2.54)

4.37E−39

7.8

69.6

TGIF2

58.87

2.18

22.72

0.91

2.59

(2.33, 2.88)

5.45E−42

6.5

71.0

MYC

181.11

8.63

49.00

2.42

3.70

(3.28, 4.17)

2.33E−53

6.0

82.0

BMP7

37.91

3.18

9.09

0.80

4.17

(3.34, 5.20)

4.84E−27

16.6

51.2

INHBA

125.48

8.60

13.43

1.08

9.34

(7.67, 11.39)

5.94E−56

4.6

75.1