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Table 4 Mutations in PDX models used for in vivo therapy experiments

From: Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies

Sample ID

Mutations in PDX

HROG05

EGFR (R108K, Y626H), K-Ras (G12D), P53 (R280K)

HROG07

APC (A1340 V), FLT3 (V592I), PIK3CA (E545K), PTPN11 (S502L)

HROG13

ABL1 (A288S), ATM (F858L), ERBB2 (G748C), GNA11 (N336K), PTEN (S207C), VHL (E94*)

HROG22

PIK3CA (E545K), PTPN11 (S502L)

HROG59

ERBB2 (Del fs*), GNAQ (2x Del fs*), KDR (Q472H), PTEN (Q17L, M198I, L265I)

  1. Mutations identified by amplicon panel sequencing covering 212 target regions in 48 cancer-related genes (Illumina MiSeq TSACP (Illumina Variant Caller 3.1.10.0)). Del: deletion, fs*: frame shift leading to stop, *: stop gain