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Table 1 Tagging SNPs analysed in PON1

From: Interaction between polyphenols intake and PON1 gene variants on markers of cardiovascular disease: a nutrigenetic observational study

SNP

Alleles (minor/major)

MAFa

Position (bp)

Locationb

Tagged SNPsc

rs854549

A/C

0.39

94,764,521

3downstream

 

rs3735590

A/G

0.05

94,765,431

3downstream

rs3917572

rs854551

A/G

0.14

94,765,613

3utr

rs854550

rs854552

C/T

0.20

94,765,860

3utr

 

rs3917567

C/T

0.04

94,768,021

Intronic

rs3917556,rs3917527,rs3917551,rs3917548,rs3917541,rs3917569,rs2158155

rs854555

A/C

0.33

94,768,327

Intronic

 

rs3917550

A/G

0.10

94,772,509

Intronic

 

rs662

C/T

0.30

94,775,382

Coding

rs2057681,rs2269829

rs3917538

A/G

0.24

94,775,829

Intronic

 

rs2074354

A/G

0.13

94,778,523

Intronic

rs3917577,rs3917586

rs854560

T/A

0.44

94,784,020

Missense

rs705378,rs854561

rs3917498

T/G

0.35

94,784,191

Intronic

 

rs2074351

A/G

0.30

94,785,735

Intronic

 

rs2272365

C/A

0.19

94,786,562

Intronic

 

rs854569

T/G

0.14

94,787,991

Intronic

 

rs3917477

G/A

0.04

94,789,902

Intronic

rs3917476

rs854571

T/C

0.26

94,792,555

5upstream

rs854570

rs854572

C/G

0.39

94,792,632

5upstream

 
  1. Bp base pair, MAF minor allele frequency
  2. aAllele frequencies were calculated in the studied population sample
  3. bPosition and location were taken from the NCBI build 36 (hg18)
  4. cTagged SNPs present a r2 >0.80 with analyzed PON1 markers