Table 2 Overview of data production
Items | XLH01-I:2 | XLH01-II:1 | XLH01-II:2 |
|---|---|---|---|
Raw reads | 52,834,894 | 65,462,716 | 60,937,646 |
Reads mapped to genome | 50,880,007 | 63,035,145 | 58,693,151 |
Mapping rate (%) | 96.30 | 96.29 | 96.31 |
Initial number of generated SNVs | 178,276 | 207,524 | 187,354 |
Initial number of generated Indels | 7,632 | 8,235 | 7,815 |
Mean depth of target region (X) | 28.23 | 37.63 | 35.12 |
Coverage of target region (%) | 96.76 | 96.71 | 96.69 |
Rate of nucleotide mismatch (%) | 0.29 | 0.26 | 0.23 |
Fraction of target covered ≥4 X (%) | 93.85 | 94.83 | 94.61 |
Fraction of target covered ≥10 X (%) | 75.49 | 80.56 | 79.45 |
Fraction of target covered ≥20 X (%) | 57.48 | 66.88 | 64.97 |
Duplication rate (%) | 7.92 | 9.59 | 8.80 |
Gender test result | F | M | F |