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Table 1 BAP1 genetic status (germline or somatic) across all 12 cases

From: BAP1 mutation is a frequent somatic event in peritoneal malignant mesothelioma

Sample

Assay 1

BAP1

Germline

LOH

Somatic (Allelic Fraction)

AA1844T

A + E + T

 

subclonal

Q393* (E:12%, T:20%)

AA1968T

A + E + T

   

AA2273T

A + E + T

  

K453* (E:48%, T:51%)

AA2463T

A + E + T

Y44*

chr3

 

AA2476T

A + E + T

 

15 Mb

I71fs (E:14%, T:20%)

AA2528T

A + E + T

   

AA2253T

A + E + T

 

0.34 Mb

 

AA2489T

A + T

 

54 Mb

 

AA2617T

A + T

NA

 

A95fs (39%)

AA2830T

T

NA

NA

 

AA2627T

T

NA

NA

Q684* (50%)

AA2819T

T

NA

NA

 
  1. 1: A: copy number array; E: whole exome sequencing; T: targeted sequencing.