Figure 3

Illustration of DNA coverage and mRNA expression levels of HER2 and fusion partners. A. DNA coverage and mRNA expression levels of HER2 and ZNF207 in sample GC196. B. DNA coverage and mRNA expression levels of HER2 and MDK in sample 431-9540474 T C. DNA coverage and mRNA expression levels of HER2 region (including HER2 and nearby gene STARD3, TCAP, PNMT, PGAP3 and MIEN1) and fusion partner NOS2 in sample GC334. The DNA integration sites were marked in green arrows and the RNA fusion junction sites were marked in cyan arrows. Exon coverage was shown in red and intron coverage was shown in blue. The coverage range for each gene was given in the right side of the figure. Average coverage for WGS is 30X and average coverage for RNASeq is 150X.