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Table 2 Primers/probes sets for quantification of PBGD and -chain (FRET).

From: Relative quantification of TCR Vbeta-chain families by real time PCR for identification of clonal T-cell populations

Primer/probe

Sequence (5'-3')

TA

MgCl2

(mM)

Standard

dilutions (pg/μl)

PBGD-fwd

TGC AGG CTA CCA TCC ATG TCC CTG C

65°C

4

1/0.1/0.001

PBGD rev

AGC TGC CGT GCA ACA TCC AGG ATG T

   

PBGD-3Fl

CGT GGA ATG TTA CGA GCA GCA GTG ATG CCT ACC-Fl

   

PBGD-5LC

LC-TGT GGG TCA TCC TCA GGG CCA TCT TC-ph

   

HAC2-fwd

ACA CCT TCT TCC CCA G

60°C

3

10/1/0.01

HAC2-rev

TCC AGT TGG TGG CAT T

   

HAC2-3Fl

GTG ATT GGG TTC CGA ATC CTC C-Fl

   

HAC2-5LC

LC-CTG AAA GTG GCC GGG TTT AAT CT-ph

   
  1. TA: Annealing temparature; Fl: Fluorescine; LC: LC Red 640; ph: phosphate