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Table 3 Candidate SNPs

From: Haplotype of gene Nedd4 binding protein 2 associated with sporadic nasopharyngeal carcinoma in the Southern Chinese population

Number RefSNP Contig Position Variant Alleles Amino acid change MAF HWpval Genotyped (%)
SNP1 RS17439810 39867905 C, G Gln104Glu 0.058 0.195 74.0
SNP2 loc123-e3l-snp2 39868005 A, G Met171Val 0.271 0.999 81.4
SNP3 RS17511578 39868252 A, C Asn189His 0.063 0.978 74.8
SNP4 RS17585937 39868402 G, A 5'UTR 0.118 1.000 76.2
SNP6 RS17511668-SNP2 39926432 G, A Glu118Lys 0.067 1.000 89.9
SNP7 RS794001-SNP1 39944127 T, G intron 0.054 0.562 97.4
SNP9 RS2252352 39950655 T, T intron 0.368 0.327 96.1
SNP10 RS2271395 39961241 G, A Ala1587Thr 0.368 1.000 94.8
SNP11 RS1442855 43164843 G, A intron 0.164 0.946 82.5
SNP12 RS2347044 43273849 A, G intron 0.225 0.377 96.9
  1. RefSNP(RS), SNP accession ID; HWpval, P value of Hardy-Weinberg equilibrium tests for control subjects; MAF, minor allele frequency; % Genotyped, Percent of samples successfully genotyped. New SNPs are shown in bold.