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Table 1 Candidate markers of response* to Yondelis

From: Adding pharmacogenomics to the development of new marine-derived anticancer agents

Gene ID

Description

IFITM2

interfer on induced transmembrane protein 2 (1-8D)

TP53

tum or protein p53 (Li-Fraumeni syndrome)

COL5A2

collagen, type V, alpha 2

JUNB

jun B proto-oncogene

BST2

bone marrow stromal cell antigen 2

HHEX

hematopoietically expressed homeobox

SERPINA3

serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3

ATF3

activating transcription factor 3

ABL1

v-abl Abelson murine leukemia viral oncogene homolog 1

BRCA1

breast cancer 1, early onset

ERCC2 XPD

excision repair cross-complementing rodent repair deficiency, complementation group 2

(xeroderma pigmentosum D)

ERCC3 XPB

excision repair cross-complementing rodent repair deficiency, complementation group 3

(xeroderma pigmentosum group B complementing)

PCNA

proliferating cell nuclear antigen

POLD3

polymerase (DNA directed), delta 3 (Interim)

POLR2G

polymerase (RNA) II (DNA directed) polypeptide G

PRKDC

protein kinase, DNA-activated, catalytic polypeptide

PTTG1

pituitary tumor-transforming 1

RAD17

RAD17 homolog (S. pombe)

  1. * Genes were selected based on several in vitro experiments of differential baseline (resistant cells vs sensitive cells) and dynamic (treated cells vs untreated cells) Gene Expression Profiles observed in sarcoma cell lines. Their mRNA and protein expression levels are currently being analyzed in tumor samples from sarcoma patients and correlated with clinical outcome in order to validate them as potential markers of response to Yondelis.