Dataset | Subpopulation | Group name | Group symbol | Total sample number (n) | Trio-excluded sample number (n) | Total number of SNPs | The number of SNPs with missense mutation | The number of SNPs with harmful (ri>0.2) missense mutation |
---|---|---|---|---|---|---|---|---|
Hapmap released in May, 2010 | European | Utah residents with Northern and Western European ancestry from the CEPH collection | CEU | 165 | 117 | 1397814 | 11185 | 3788 |
Toscans in Italy | TSI | 102 | 102 | 1419970 | 11160 | 3778 | ||
Han Chinese in Beijing, China | CHB | 137 | 137 | 1341772 | 12205 | 4441 | ||
Asian | Chinese in Metropolitan Denver, Colorado | CHD | 109 | 109 | 1311767 | 9907 | 3263 | |
Japanese in Tokyo, Japan | JPT | 113 | 113 | 1294406 | 11008 | 3887 | ||
African | African ancestry in Southwest USA | ASW | 87 | 75 | 1543115 | 12190 | 4090 | |
Luhya in Webuye, Kenya | LWK | 110 | 110 | 1526783 | 13518 | 4861 | ||
Maasai in Kinyawa, Kenya | MKK | 184 | 156 | 1532002 | 11694 | 3836 | ||
Yoruba in Ibadan, Nigeria | YRI | 203 | 149 | 1493761 | 11583 | 3880 | ||
Independent groups | Gujarati Indians in Houston, Texas | GIH | 101 | 101 | 1408904 | 10491 | 3471 | |
Mexican ancestry in Los Angeles, California | MEX | 86 | 58 | 1453054 | 12770 | 4562 | ||
1000 Genomes, pilot, low-coverage, released in July, 2010 | European | Utah residents with Northern and Western European ancestry from the CEPH collection | CEU | 60 | 60 | 7724854 | 86040 | 14807 |
Asian | Han Chinese in Beijing, China and Japanese in Tokyo, Japan | CHB+JPT | 60 | 60 | 6107825 | 60584 | 9912 | |
African | Yoruba in Ibadan, Nigeria | YRI | 59 | 59 | 10556156 | 119798 | 21055 |