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Table 3 List of the non-coding SNPs and related RegulomeDB scores

From: Association between HMGCR, CRP, and CETP gene polymorphisms and metabolic/inflammatory serum profile in healthy adolescents

dbSNP IDs

Chromosome location

Rank

Score

rs3846663

chr5:74655725–74655726

1f

0.55324

rs3024509

chr1:206943296–206943297

3a

0.55134

rs5030708

chr16:56996278–56996279

3a

0.47027

rs142563098

chr5:74633013–74633014

4

0.60906

rs1417938

chr1:159684185–159684186

5

0.58955

rs7481842

chr11:61639704–61639705

5

0.13454

rs1130864

chr1:159683090–159683091

7

0.18412

  1. RegulomeDb category summaries [33]. Rank refers to the supporting evidence for that particular location or variant id. In general, if more supporting data is available, the higher is its likelihood of being functional and hence receives a higher score (with 1 being higher and 7 being lower score); 1b-1f: Likely to affect binding and linked to expression of a gene target; 2a-2c: Likely to affect binding; 3a-3b: Less likely to affect binding;4-5-6: Minimal binding evidence
  2. The RegulomeDB probability score is ranging from 0 to 1, with 1 being most likely to be a regulatory variant