From: TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository
Distance matrix
TPM (Fig. 1A)
CountDEseq2 (Fig. 1B)
CountTMM (Additional file 1: Figure S1A)
FPKM (Additional file 1: Figure S1B)
TPM-Zscore (Additional file 1: Figure S1C)
TPM-TMM (Additional file 1: Figure S3A)
1-Pearson
0.613
0.091
0.089
0.106
3.152a
0.102
