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Fig. 1 | Journal of Translational Medicine

Fig. 1

From: TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository

Fig. 1

A Hierarchical clustering of 61 patient-derived xenograft (PDX) samples using TPM data. B Hierarchical clustering of 61 PDX samples using DESeq2 normalized count data. Distance metric 1-Pearson correlation was used to generate the dendrogram in each right panel and Euclidean distance was used for the dendrogram in each left panel. Discordant models are highlighted with different color labels

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