Table 1 SNPs that show significant differences between the Prakriti groups after FDR correction for multiple testing set at a threshold of significance of p < 0.05
Gene | SNP | Variation | Comparison | Allele | Allele frequency 1 | Allele frequency 2 | P value |
|---|---|---|---|---|---|---|---|
Allele frequency (1 vs. 2) | |||||||
EPR | rs1171271 | C/T | PvsK | C | 0.46 | 0.13 | 5.40E−05 |
OR6K3 | rs857703 | A/G | KvsV | A | 0.11 | 0.43 | 4.44E−05 |
UCP2 | rs660339 | A/G | KvsV | A | 0.15 | 0.49 | 4.23E−05 |
OLR1 | rs3741860 | A/G | VvsP | G | 0.49 | 0.14 | 2.87E−05 |
OLR1 | rs3741860 | A/G | PvsK | G | 0.14 | 0.53 | 6.35E−06 |
SPTA1 | rs857691 | C/T | PvsK | T | 0.40 | 0.06 | 1.63E−05 |
SPTA1 | rs857721 | A/T | PvsK | A | 0.43 | 0.05 | 6.05E−07 |
VWF | rs1063856 | C/T | PvsK | C | 0.05 | 0.37 | 1.55E−05 |
OR10Z1 | rs857685 | A/C | PvsK | C | 0.41 | 0.05 | 1.46E−06 |