Deciphering the gene expression profile of peroxisome proliferator-activated receptor signaling pathway in the left atria of patients with mitral regurgitation

Background Differentially expressed genes in the left atria of mitral regurgitation (MR) pigs have been linked to peroxisome proliferator-activated receptor (PPAR) signaling pathway in the KEGG pathway. However, specific genes of the PPAR signaling pathway in the left atria of MR patients have never been explored. Methods This study enrolled 15 MR patients with heart failure, 7 patients with aortic valve disease and heart failure, and 6 normal controls. We used PCR assay (84 genes) for PPAR pathway and quantitative RT-PCR to study specific genes of the PPAR pathway in the left atria. Results Gene expression profiling analysis through PCR assay identified 23 genes to be differentially expressed in the left atria of MR patients compared to normal controls. The expressions of APOA1, ACADM, FABP3, ETFDH, ECH1, CPT1B, CPT2, SLC27A6, ACAA2, SMARCD3, SORBS1, EHHADH, SLC27A1, PPARGC1B, PPARA and CPT1A were significantly up-regulated, whereas the expression of PLTP was significantly down-regulated in the MR patients compared to normal controls. The expressions of HMGCS2, ACADM, FABP3, MLYCD, ECH1, ACAA2, EHHADH, CPT1A and PLTP were significantly up-regulated in the MR patients compared to patients with aortic valve disease. Notably, only ACADM, FABP3, ECH1, ACAA2, EHHADH, CPT1A and PLTP of the PPAR pathway were significantly differentially expressed in the MR patients compared to patients with aortic valve disease and normal controls. Conclusions Differentially expressed genes of the PPAR pathway have been identified in the left atria of MR patients compared with patients with aortic valve disease and normal controls.


Background
Mitral regurgitation (MR) is an important cause of heart failure secondary to valvular heart disease [1]. Structural remodeling associated with atrial enlargement developed in the left atrial myocardium of MR patients with heart failure [2][3][4]. Differential gene expression related to the left atrial structural remodeling of MR has been reported in the pig MR model [5]. Interestingly, gene ontology and pathway enrichment analysis of the differentially expressed genes in that study showed that peroxisome proliferator-activated receptor (PPAR) signaling pathway was identified in the KEGG pathway. However, specific genes of the PPAR signaling pathway that were differentially expressed in the left atrial myocardium of MR patients have never been explored.
The PPARs are ligand activated transcription factors that regulate genes important in cell differentiation, various metabolic processes, especially lipid and glucose homeostasis, insulin sensitivity, control of inflammatory processes and vascular integrity [6]. The family of PPARs comprises three isoforms: PPARα, PPARβ/δ and PPARγ [7]. PPARα is expressed mainly in metabolically active tissues, such as heart, liver, and skeletal muscle [6], and plays important physiologic roles in fatty acid oxidation and fatty acid metabolism.
In this study, we aim to explore the key element genes of the PPAR signaling pathway that were differentially expressed in the left atrial myocardium of MR patients vs. normal controls. The left atrial myocardium of patients with severe aortic valve disease was also used as a reference for gene analysis. The results from this study may identify specific genes of the PPAR signaling pathway that might be responsible for the atrial structural remodeling associated with atrial enlargement and progression of heart failure in patients with MR.

Patient population
This study enrolled 15 severe non-ischemic MR patients with heart failure and sinus rhythm (age 57 ± 9 years) and 7 patients with severe degenerative aortic valve disease and heart failure in sinus rhythm (age 60 ± 11 years; aortic stenosis in 1, aortic regurgitation in 4, combined aortic stenoregurgitation in 2). Exclusion factors include previous myocardial infarction, febrile disorder, infectious or inflammatory disease, autoimmune disease, malignancy, acute or chronic viral hepatitis or use of immunosuppressive drugs. Informed consent was obtained from each study patient, and the study protocol conforms to the ethical guidelines of the 1975 Declaration of Helsinki as reflected in a priori approval by the institution's human research committee (102-2219C).

Specimen storage
Atrial tissues of MR patients and aortic valve disease patients were sampled from the left atrial free wall during surgery. After excision, some atrial tissues were immediately frozen in liquid nitrogen. Additionally, some atrial tissues were placed into a Tissue Tek ® container which was then filled with Tissue Tek ® optimum cutting temperature compound (Sakura ® Finetek, CA, USA) and these samples were frozen in liquid nitrogen for later histochemical study.

PCR assay and data processing
RNAs were extracted from the myocardial tissue using a RiboPureTM kit (Ambion, Grand Island, NY, USA) according to the manufacturer's protocol. RNA quality was assessed using an Agilent 2100 Bioanalyzer (Agilent Technologies Inc, Santa Clara, CA, USA). PPAR pathway related resources were obtained using information from website (https://www.qiagen.com/tw/shop/genes-andpathways/pathway-details/?pwid=367). A total of 84 genes of the PPAR signaling pathway were examined by RT 2 profiler PCR array (Qiagen, CA, USA) according to the manufacturer's directions. Ribosomal protein, large, P0 (RPLP0) gene served as the endogenous control. Foldchange values greater than one indicated a positive-or an up-regulation, and fold-change values less than one indicated a negative or down-regulation.

Quantitative determination of RNAs by real-time RT-PCR
The RNA samples were quantified using a spectrophotometer. First-strand cDNAs were synthesized with reverse transcriptase and oligo (dT) primers. Real-time quantitative PCR was performed on the ABI Prism 7500 FAST sequence detection system (Applied Biosystems, CA, USA), using SYBR Green PCR Master Mix (Qiagen, CA, USA). The results were normalized against RPLP0 gene expression (the endogenous control). The selected genes (mRNAs) and primer sequences are presented in Table 1. The Primer3 Input (version 0.4.0) (http://bioinfo.ut.ee/primer3-0.4.0/) was used to design the primers. Quantitative RT-PCR values were presented in ΔCq units.

Western blotting
Protein concentrations of atrial myocardial tissues were determined by the Bradford method (Bio-Rad) according to the supplier's instructions. The HeLa cell lysate (Santa Cruz, Texas, USA) served as positive control. 20 μg protein extracts were electrophoresed on a 12 % acrylamide SDS-PAGE gel and immunoblotted onto PVDF membranes. The membranes were blocked for 1 h in PBST containing 5 % w/v nonfat dry milk. The primary antibodies, including anti-ACADM and ECH1 (Abcam, Cambridge, USA), were used to react with the blots at room temperature for 2 h. Immunoreactivity was revealed with horseradish peroxidase-conjugated secondary antibody. All specific values of proteins evaluated were standardized to GAPDH (GeneTex, CA, USA).

Oil red O staining
Left atrial tissues were sliced into 8-µm sections, stained with Oil red O to visualize lipid accumulation (ScyTek Laboratories, Utah, USA) according to the manufacturer's directions. Sections were mounted and visualized using an Olympus BX51 microscope. The Oil red O stained area per myocyte was analyzed by Cellsens Dimension (Olympus, JAPAN) with at least 100 randomly chosen myocytes per each sample.

Statistical analysis
Data are presented as mean ± SD (baseline characteristics) or SEM (gene, proteins, and Oil red O staining expressions). Categorical variables were compared using Chi square test or Fisher exact test as appropriate. Continuous variables among 3 groups were analyzed by the Kruskal-Wallis Test, and continuous variables between 2 groups were analyzed by the Mann-Whitney Test. Statistical analysis was performed using commercial statistical software (IBM SPSS Statistics 22). A P value of <0.05 was considered statistically significant. Table 2 lists the clinical characteristics of the MR patients with heart failure and patients with aortic valve disease and heart failure. There was no significantly difference in heart failure status between MR patients with heart failure and patients with aortic valve disease and heart failure. The two groups did not significantly differ in age, prevalence of hypertension and diabetes mellitus, and use of β-blockers and calcium channel blockers.

Baseline characteristics of patients studied
The left atrial size was significantly larger in the MR patients with heart failure than patients with aortic valve disease and heart failure (P < 0.05). The MR patients with heart failure and patients with aortic valve disease and heart failure did not significantly differ in left ventricular size and ejection fraction.

Gene expression profiling analysis of the PPAR signaling pathway through PCR assay in the left atrium of MR patients with heart failure vs. normal controls
To determine the effect of MR and heart failure on the gene expression of PPAR signaling pathway, we compared the expression profile by PCR assay in the left atria of MR patients with heart failure (n = 5) to normal controls (n = 3; 76-year-old Caucasian female, 24-yearold Caucasian male and 27-year-old Caucasian male, purchased from BioChain, Newark, CA, USA). Differentially expressed genes were filtered using criteria of a fold-change in expression level more than 2 or less than 0.5 and P value <0.1 in the left atria of MR patients with heart failure compared to normal controls. A total of 23 differentially expressed genes of PPAR signaling pathway Table 1 Primer sequences for real-time PCR ACAA2 acetyl-CoA acyltransferase 2, ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain, APOA1 Apolipoprotein A-I, CPT1A carnitine palmitoyltransferase 1A (liver), CPT1B carnitine palmitoyltransferase 1B (muscle), CPT2 carnitine palmitoyltransferase 2, ECH1 enoyl CoA hydratase 1, peroxisomal, EHHADH enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase, ETFDH electron-transferring-flavoprotein dehydrogenase, FABP3 fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor), PPARA peroxisome proliferator-activated receptor alpha, HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial), were identified to be differentially expressed in the left atrial tissues of MR patients with heart failure compared to normal controls (Table 3). Therefore, we focused on deciphering and experimental validation of these 23 genes in the following section in order to identify some of the differentially expressed genes of the PPAR signaling pathway that might be responsible for the structural remodeling of left atria in the MR patients [2][3][4].
Notably, only ACADM, FABP3, ECH1, ACAA2, EHHADH, CPT1A and PLTP of the PPAR signaling pathway were differentially expressed in the left atria of MR patients compared to patients with aortic valve disease and normal controls. The expressions of ACADM, FABP3, ECH1, ACAA2, EHHADH and CPT1A in the left atria were significantly up-regulated in the MR patients with heart failure compared to patients with aortic valve disease and heart failure and normal controls (Fig. 1). However, MR patients with heart failure had significantly up-regulated PLTP expression in the left atria compared to patients with aortic valve disease and heart failure but had significantly down-regulated PLTP expression in the left atria compared to normal controls (Fig. 1).  (Fig. 2). The expression of ACADM protein (1.81 ± 0.11 vs. 1.43 ± 0.09, P = 0.011) in the left atria was significantly up-regulated in the patients with aortic valve disease and heart failure (n = 6) compared to normal controls (n = 4) (Fig. 2). The expression of ECH1 protein (2.07 ± 0.30 vs. 1.70 ± 0.27, P = 0.670) in the left atria was up-regulated in the patients with aortic valve disease and heart failure (n = 6) compared to normal controls (n = 4), although the difference did not reach statistical significance.

Left atrial myocytes fat staining
The percentage of area stained with Oil red O (lipid droplets) per myocyte in the left atria was significantly higher in the MR patients with heart failure (n = 6) compared to normal controls (n = 3; 49-year-old African American male, 76-year-old Caucasian female, and 77-yearold Caucasian male, purchased from BioChain, Newark, CA, USA) (21.76 ± 3.87 vs. 3.09 ± 0.70 %, P = 0.020) (Fig. 3). The percentage of area stained with Oil red O (lipid droplets) per myocyte in the left atria was higher in the MR patients with heart failure (n = 6) compared to patients with aortic valve disease and heart failure (n = 3) (21.76 ± 3.87 vs. 8.75 ± 0.70 %, P = 0.071). The percentage of area stained with Oil red O (lipid droplets) per myocyte in the left atria was higher in the patients with aortic valve disease and heart failure (n = 3) compared to normal controls (n = 3) (8.75 ± 0.70 vs. 3.09 ± 0.70 %, P = 0.050).

Discussion
This study identifies and reports the altered gene expression pattern of the PPAR signaling pathway in the left atria among MR patients with heart failure, patients with aortic valve disease and heart failure, and normal controls without valve disease and heart failure. Notably, seven genes (ACADM, FABP3, ECH1, ACAA2, EHHADH, CPT1A and PLTP) of the PPAR signaling pathway were differentially expressed in the left atria of MR patients compared to patients with aortic valve disease and normal controls.
The PPAR transcriptional regulatory complex controls the expression of fatty acid utilization genes by binding to specific promoter DNA response elements with its heterodimeric partner, the retinoid X receptor, and interacting with PPARγ coactivator-1α to recruit other cofactors with histone acetylase activity to initiate gene transcription for fatty acid oxidation [8]. The myocardium utilizes primarily fatty acids for ATP production via mitochondrial fatty acid oxidation. However, altered expression of the fatty acid oxidation enzymes can impair mitochondrial metabolism and lead to pathologic remodeling of myocardium, probably through lipotoxicity, reactive oxidative stress overproduction, and ATP deficiency [9][10][11]. Our prior studies showed that altered mitochondrial function and reactive oxidative stress overproduction due to nox2 containing NADPH oxidase activity developed in the atria of MR patients with heart failure [12,13]. Moreover, heart-specific overexpression of PPAR induced several target genes involved in fatty acid utilization and increased cardiac fatty acid uptake and oxidation [8]. In contrast, heart-specific overexpression of PPAR markedly diminished the expression of genes involved in glucose metabolism leading to impaired glucose uptake and utilization [8]. Of note, our prior study showed that glycogen accumulation increased in the atrial myocytes of MR patients [4]. Moreover, this study showed that lipid accumulation in the atrial myocytes was significantly increased in the MR patients with heart failure compared to normal controls.
Acyl-CoA dehydrogenase, C-4 to C-12 straight chain (ACADM) gene provides instructions for making an enzyme called medium-chain acyl-CoA dehydrogenase, which functions within mitochondria and is essential for fatty acid oxidation to metabolize medium-chain fatty acids [14].
Fatty-acid-binding protein 3, muscle and heart (FABP3), also known as heart-type FABP, is an intracellular lipid-binding protein for transporting fatty acids and other lipophilic substances from the cytoplasm to the nucleus and subsequently, PPAR activation by fatty acid ligands [8,15]. Glatz JF et al. [16] reported that FABP overexpression in skeletal muscle increased fatty acids transported into the muscle cell and consequently, fatty acid oxidation was increased. On the other hand, PPAR can regulate the expression of FABP3 [8].
Enoyl-CoA hydratase1 (ECH1), a mitochondrial β-oxidation enzyme, has been shown to play an important role for mitochondrial integrity and function [17]. The expression of ECH1 in tissue is associated with nitric oxide availability [18] and a decreased production of nitric oxide by the mitochondrial form of nitric oxide synthase has been proposed as a cause of decreased mitochondrial biogenesis, resulting in impairment of cellular turnover, tissue regeneration and lipid metabolism [19]. Acetyl-CoA acyltransferase 2 (ACAA2) encoding protein catalyzes the last step of the mitochondrial fatty acid β-oxidation spiral. Additionally, ACAA2 has been demonstrated to have antiapoptotic effects, which provided a possible linkage between fatty acid metabolism and apoptosis of cells [20].
Enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase (EHHADH), regulated and mediated by PPARα, encodes a protein that is an l-bifunctional enzyme essential for the peroxisomal β-oxidation pathway to the breakdown of very long chain fatty acids and is indispensable for the production of medium-chain dicarboxylic acids [21].
Carnitine palmitoyltransferase 1 (CPT1) is one of the carnitine cycle enzymes that plays a role in the transportation of long-fatty acids into the mitochondria for ß-oxidation that allows the body to process fats to provide energy during times of fasting and illness [22].
Phospholipid transfer protein (PLTP) is a widely expressed lipid transfer protein participating in lipoprotein metabolism in the plasma and tissues [23]. PLTP activity is a risk factor for coronary artery disease [24] and PLTP also plays a role in inflammation and oxidative stress [25].
Taken together, this study demonstrated that the altered expression of ACADM, FABP3, ECH1, ACAA2, EHHADH, CPT1A and PLTP of the PPAR signaling pathway in the left atria of MR patients compared to patients with aortic valve disease and normal controls should play a substantially role in the altered fatty acid metabolism (Fig. 3), glucose metabolism, energy utilization, and pathologic remodeling (hypertrophy, myolysis, glycogen accumulation, apoptosis, autophagy and inflammation) in the atria of MR patients, either partly through altered mitochondrial function, reactive oxidative stress overproduction, inflammation and apoptosis or partly as an adaptive response to volume overload of MR [3,4,12,13,26].

Study limitations
There are several limitations in this study. Firstly, the number of study subjects was relatively small. However, the quantitative real-time RT-PCR results were significant and consistent with PCR assay. Secondly, the functional roles of ACADM, FABP3, ECH1, ACAA2, EHHADH, CPT1A and PLTP of the PPAR signaling pathway on the regulation of atrial structural remodeling of MR patients were not specifically examined in this study.