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Table 4 Correlation analysis between HLA-DPA1 and CD4 and gene markers of different immune cells in HNSCC from the TIMER database

From: Multi-omics characterization of a scoring system to quantify hypoxia patterns in patients with head and neck squamous cell carcinoma

Cell type

Gene markers

HLA-DPA1

CD4

None

Purity

None

Purity

Cor

p-value

cor

p-value

Cor

p-value

Cor

p-value

CD8 + T

CD8A

8.06E-01

0.00E + 00

−2.77E-01

4.03E-10

7.48E-01

1.75E-89

−2.77E-01

4.03E-10

CD8B

7.65E-01

1.45E−101

−2.42E-01

5.06E-08

7.15E-01

2.38E-78

−2.42E-01

5.06E-08

T cell (general)

CD3D

8.01E-01

0.00E + 00

−2.98E-01

1.35E-11

7.46E-01

1.47E-88

−2.98E-01

1.35E-11

CD3E

8.47E-01

9.59E−145

−2.99E-01

1.17E-11

8.43E-01

2.18E-134

−2.99E-01

1.17E-11

CD2

8.50E-01

0.00E + 00

−2.85E-01

1.15E-10

8.36E-01

3.54E-130

−2.85E-01

1.15E-10

B cell

CD19

4.77E-01

5.74E−31

−2.61E-01

4.33E-09

5.05E-01

2.74E-33

−2.61E-01

4.33E-09

CD79A

4.71E-01

3.47E−30

−2.28E-01

3.05E-07

5.12E-01

2.50E-34

−2.28E-01

3.05E-07

Monocyte

CD86

7.73E-01

0.00E + 00

−2.95E-01

2.26E-11

8.45E-01

2.22E-135

−2.95E-01

2.26E-11

CD115 (CSF1R)

8.33E-01

6.76E−136

−3.04E-01

4.98E-12

9.39E-01

5.83E-230

−3.04E-01

4.98E-12

TAM

CCL2

5.50E-01

0.00E + 00

−2.58E-01

5.98E-09

6.13E-01

2.64E-52

−2.58E-01

5.98E-09

CD68

4.52E-01

0.00E + 00

−1.72E-01

1.24E-04

5.68E-01

1.75E-43

−1.72E-01

1.24E-04

IL10

5.57E-01

7.92E−44

−3.13E-01

1.21E-12

6.28E-01

1.74E-55

−3.13E-01

1.21E-12

M1 macrophage

INOS (NOS2)

2.55E-01

3.57E−09

7.08E-02

1.16E-01

2.96E-01

2.09E-11

7.08E-02

1.16E-01

IRF5

3.14E-01

3.02E−13

−1.43E-03

9.75E-01

3.82E-01

1.44E-18

−1.43E-03

9.75E-01

M2 macrophage

COX2 (PTGS2)

-1.53E-01

4.45E−04

9.98E-02

2.67E-02

-1.55E-01

5.32E-04

9.98E-02

2.67E-02

CD163

6.89E-01

0.00E + 00

−2.86E-01

1.02E-10

8.07E-01

2.37E-114

−2.86E-01

1.02E-10

VSIG4

6.22E-01

0.00E + 00

−2.57E-01

7.42E-09

7.53E-01

3.02E-91

−2.57E-01

7.42E-09

MS4A4A

7.38E-01

5.15E−91

−2.87E-01

8.35E-11

8.38E-01

1.73E-131

−2.87E-01

8.35E-11

Neutr-ophils

CD66b (CEACAM8)

5.92E-02

1.77E−01

3.42E-02

4.48E-01

4.51E-02

3.18E-01

3.42E-02

4.48E-01

CD11b (ITGAM)

6.00E-01

2.39E−52

−1.37E-01

2.27E-03

7.20E-01

7.13E-80

−1.37E-01

2.27E-03

CCR7

6.52E-01

1.71E−64

−3.22E-01

2.23E-13

7.38E-01

9.46E-86

−3.22E-01

2.23E-13

NK cell

KIR2DL1

3.81E-01

1.69E−19

−9.34E-02

3.81E-02

3.44E-01

4.23E-15

−9.34E-02

3.81E-02

KIR2DL3

5.10E-01

6.99E−36

−1.36E-01

2.56E-03

4.69E-01

2.57E-28

−1.36E-01

2.56E-03

KIR2DL4

6.02E-01

7.92E−53

−1.83E-01

4.30E-05

4.95E-01

7.06E-32

−1.83E-01

4.30E-05

KIR3DL1

4.47E-01

4.78E−27

−1.44E-01

1.35E-03

4.27E-01

2.70E-23

−1.44E-01

1.35E-03

KIR3DL2

5.74E-01

4.40E−47

−1.47E-01

1.05E-03

5.56E-01

2.63E-41

−1.47E-01

1.05E-03

KIR3DL3

2.33E-01

7.00E−08

−8.59E-02

5.68E-02

2.05E-01

4.56E-06

−8.59E-02

5.68E-02

KIR2DS4

3.47E-01

2.92E−16

−1.48E-01

9.93E-04

3.32E-01

4.09E-14

−1.48E-01

9.93E-04

Dend-ritic cell

HLA-DPB1

9.57E-01

0.00E + 00

−3.02E-01

7.78E-12

8.70E-01

1.09E-152

−3.02E-01

7.78E-12

HLA-DQB1

8.14E-01

6.55E−125

−2.28E-01

3.28E-07

7.03E-01

1.07E-74

−2.28E-01

3.28E-07

HLA-DRA

9.74E-01

0.00E + 00

−2.99E-01

1.16E-11

8.51E-01

1.33E-139

−2.99E-01

1.16E-11

BDCA-1

5.37E-01

2.59E−40

−2.57E-01

7.19E-09

6.25E-01

1.07E-54

−2.57E-01

7.19E-09

BDCA-4

4.59E-01

1.61E−28

−2.07E-01

3.38E-06

5.65E-01

6.16E-43

−2.07E-01

3.38E-06

CD11c

6.45E-01

1.01E−62

−2.83E-01

1.53E-10

7.89E-01

7.01E-106

−2.83E-01

1.53E-10

T-bet (TBX21)

7.88E-01

9.07E−112

−2.44E-01

4.20E-08

7.68E-01

2.85E-97

−2.44E-01

4.20E-08

Th1

STAT4

6.52E-01

0.00E + 00

−2.61E-01

3.96E-09

6.94E-01

6.30E-72

−2.61E-01

3.96E-09

STAT1

6.26E-01

0.00E + 00

−2.40E-01

7.06E-08

5.29E-01

5.97E-37

−2.40E-01

7.06E-08

IFN-y(IFNG)

7.09E-01

5.81E−81

−2.34E-01

1.49E-07

5.79E-01

2.19E-45

−2.34E-01

1.49E-07

TNF-a(TNF)

2.28E-01

1.47E−07

−1.27E-01

4.90E-03

2.26E-01

4.19E-07

−1.27E-01

4.90E-03

Th2

GATA3

4.56E-01

3.72E−28

−2.27E-01

3.63E-07

4.93E-01

1.61E-31

−2.27E-01

3.63E-07

STAT5A

6.20E-01

8.53E−57

−1.32E-01

3.28E-03

6.43E-01

9.08E-59

−1.32E-01

3.28E-03

STAT6

2.90E-01

1.73E−11

6.90E-02

1.26E-01

3.25E-01

1.31E-13

6.90E-02

1.26E-01

IL13

4.10E-01

1.52E−22

−1.54E-01

5.78E-04

4.22E-01

1.06E-22

−1.54E-01

5.78E-04

Tfh

BCL6

8.87E-02

4.28E−02

1.75E-01

8.98E-05

1.69E-01

1.57E-04

1.75E-01

8.98E-05

IL21

5.20E-01

2.03E−37

−1.75E-01

9.02E-05

5.12E-01

2.50E-34

−1.75E-01

9.02E-05

Th17

STAT3

3.84E-01

0.00E + 00

−1.69E-02

7.08E-01

4.09E-01

2.82E-21

−1.69E-02

7.08E-01

IL17A

2.85E-01

3.45E−11

−1.02E-01

2.40E-02

2.74E-01

6.59E-10

−1.02E-01

2.40E-02

Treg

FOXP3

7.93E-01

0.00E + 00

−2.53E-01

1.18E-08

8.70E-01

9.39E-153

−2.53E-01

1.18E-08

CCR8

6.88E-01

2.64E−74

−2.34E-01

1.39E-07

7.89E-01

4.56E-106

−2.34E-01

1.39E-07

STAT5B

3.76E-01

6.17E−19

−5.12E-02

2.56E-01

4.91E-01

2.65E-31

−5.12E-02

2.56E-01

TGFb(TGFb1)

4.60E-02

2.95E−01

−1.42E-01

1.55E-03

1.36E-01

2.39E-03

−1.42E-01

1.55E-03

T-cell -exhau-stion

PD-1(PDCD1)

8.20E-01

7.03E−128

−2.68E-01

1.57E-09

7.74E-01

1.45E-99

−2.68E-01

1.57E-09

CTLA4

7.66E-01

0.00E + 00

−3.10E-01

2.04E-12

7.69E-01

1.14E-97

−3.10E-01

2.04E-12

LAG3

7.67E-01

2.04E−102

−2.37E-01

9.98E-08

6.97E-01

7.88E-73

−2.37E-01

9.98E-08

TIM-3(HAVCR2)

8.68E-01

0.00E + 00

−2.77E-01

3.81E-10

9.26E-01

2.09E-209

−2.77E-01

3.81E-10

GZMB

7.22E-01

0.00E + 00

−2.64E-01

2.68E-09

6.14E-01

2.30E-52

−2.64E-01

2.68E-09