Table 3 Analysis of antigen in ccRCC
From: The intrarenal landscape of T cell receptor repertoire in clear cell renal cell cancer
Antigen name | TRA | TRB | ||
|---|---|---|---|---|
Antigen value | Frequency (%) | Antigen value | Frequency (%) | |
MHC. class | MHCI | 7.74 | MHCI | 2.83 |
Antigen. species | CMV | 6.01 | CMV | 1.93 |
EBV | 2.65 | EBV | 0.49 | |
InfluenzaA | 0.62 | SARS-CoV-2 | 0.33 | |
HomoSapiens | 0.53 | InfluenzaA | 0.29 | |
HCV | 0.49 | HomoSapiens | 0.24 | |
SARS-CoV-2 | 0.43 | HIV-1 | 0.09 | |
HIV-1 | 0.43 | HIV | 0.09 | |
YFV | 0.18 | |||
Antigen. gene | IE1 | 4.24 | IE1 | 1.85 |
pp65 | 1.81 | pp65 | 0.36 | |
EBNA4 | 1.64 | BZLF1 | 0.32 | |
EBNA3A | 1.36 | ORF14 | 0.32 | |
M | 0.55 | M | 0.29 | |
BZLF1 | 0.46 | EBNA4 | 0.20 | |
Spike | 0.43 | SF3B1 | 0.18 | |
Gag | 0.43 | Nef | 0.09 | |
BST2 | 0.42 | Gag | 0.09 | |
NSP3 | 0.36 | MLANA | 0.06 | |
NS3 | 0.25 | LMP2A | 0.03 | |
CORE | 0.23 | |||
NS4B | 0.18 | |||
PMEL | 0.11 | |||
Antigen. epitope | KLGGALQAK | 4.24 | KLGGALQAK | 1.85 |
NLVPMVATV | 1.81 | NLVPMVATV | 0.35 | |
AVFDRKSDAK | 1.63 | LLLEWLAMA | 0.32 | |
RLRAEAQVK | 1.35 | GILGFVFTL | 0.29 | |
GILGFVFTL | 0.55 | GLCTLVAML | 0.26 | |
RAKFKQLL | 0.46 | RLPGVLPRA | 0.18 | |
SLFNTVATLY | 0.42 | AVFDRKSDAK | 0.17 | |
LLLGIGILV | 0.42 | KAFSPEVIPMF | 0.09 | |
IVTDFSVIK | 0.40 | HTQGYFPD | 0.09 | |
YLQPRTFLL | 0.38 | ELAGIGILTV | 0.06 | |
TTDPSFLGRY | 0.36 | RAKFKQLL | 0.06 | |
ATDALMTGF | 0.25 | IVTDFSVIK | 0.04 | |
GPRLGVRAT | 0.23 | FLYALALLL | 0.03 | |
LLWNGPMAV | 0.18 | |||
KTWGQYWQV | 0.11 | |||