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Table 4 Evaluation of the modeled vaccine before and after refinement. Analysis of the models was performed by the PROCHECK Ramachandran plot, ERRAT and ProSA-web Z-score

From: In silico designing of a novel epitope-based candidate vaccine against Streptococcus pneumoniae with introduction of a new domain of PepO as adjuvant

Step

Ramachandran plot

ERRAT

Z-score

Most favored regions (%)

Allowed regions (%)

Disallowed regions (%)

Before refinement

92.5

6.9

0.6

94.92

− 6.78

After refinement

94.00

5.1

0.9

96.11

− 6.96