Fig. 7
A–C: P-value coverage plot of the top 50 features in the T0 vs T1, T0 vs T2, and T1 vs T2 comparisons with decreasing order. The color dots denote the − log10 p-value of top 50 features in the original data (permutation proportion is 0). The horizontal bars describe the 95% quantile confidence intervals of the − log10 p-value in the full permutation scenario. D–F Effect size of the identified features in the T0 vs T1, T0 vs T2, and T1 vs T2 comparisons