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Table 1 Relative primer sequences used for PCR

From: MYBL2-induced PITPNA-AS1 upregulates SIK2 to exert oncogenic function in triple-negative breast cancer through miR-520d-5p and DDX54

Gene

Primer sequences

PITPNA-AS1

Forward: 5′-GCAGGGTGGATAAAGAGGA-3′

Reverse: 5′-CCTACTGACAGGATGTCCT-3′

miR-524-5p

Forward: 5′-CTACAAAGGGAAGCACTTTCTCG-3′

Reverse: 5′-CTCTACAGCTATATTGCCAGCCAC-3′

miR-520d-5p

Forward: 5′-CTACAAAGGGAAGCCCTTTCG-3′

Reverse: 5′-CTCTACAGCTATATTGCCAGCCAC-3′

U6

Forward: 5′-CTCGCTTCGGCAGCACA-3′

Reverse: 5′-AACGCTTCACGAATTTGCGT-3′

DENND1B

Forward: 5′-TGCATCCTTAGTTACCTTCCC-3′

Reverse: 5′-CAGTTCCTTAGCCAAGTAATCTG-3′

ATL3

Forward: 5’-CAAGAGGAGCAGTGTAATGTG-3′

Reverse: 5′-AAACGTTCCATTGCTTCGT-3′

SIK2

Forward: 5′-GAGGTCCACAACAGGTCTC-3′

Reverse: 5′-TGCTACAATTCCCTGGGTG-3′

SNRNP200

Forward: 5′-CTCCAATGCCAAGGATGTG-3′

Reverse: 5′-CTGATGTTGAAGCCCTGGA-3′

AFF3

Forward: 5′-TACAACTTCCACACCAGCA-3′

Reverse: 5′-ATCTCCAAGCAAGGTCCTG-3′

UBE2J1

Forward: 5′-GTACATCGTACGGACTCCAG-3′

Reverse: 5′-TCATGGAGGTATTCTTAGCTACAG-3′

DECR1

Forward: 5′-GGTAAAGGAATGACAACTCTTCTG-3′

Reverse: 5′-CATTTCGGCTGGCTATCAC-3′

DDX54

Forward: 5′-TGGTGAGTGATCGAGTGAG-3′

Reverse: 5′-CTTCCTGTCCTGACTGTCC-3′

MYBL2

Forward: 5′-TCCTGGATTCCTGTAACAGC-3′

Reverse: 5′-AGTTCAGAAACTGGGAGGG-3′

E2F6

Forward: 5ʹ-TAGATGGATAGGATCTGATCTTAGC-3ʹ

Reverse: 5ʹ-GATAAGTCAGAAAGTTCCTCCTG-3ʹ

PAX5

Forward: 5ʹ-TGTTTGCCTGGGAGATCAG-3ʹ

Reverse: 5ʹ-CGGATGATCCTGTTGATGGA-3ʹ

FOXP2

Forward: 5ʹ-GATGCAACAACTCCAGCAG-3ʹ

Reverse: 5ʹ-AGGACTTAAGCCAGCTTGAG-3ʹ

ELK4

Forward: 5ʹ-GCCCACTGGGAATACTGAG-3ʹ

Reverse: 5ʹ-TCAGTATGATGGGTGTCTGTG-3ʹ

YY1

Forward: 5ʹ-GAATTTGCTAGGGCTGCAC-3ʹ

Reverse: 5ʹ-CACATTCTGCACAGACGTG-3ʹ

GAPDH

Forward: 5ʹ-GCATCCTGGGCTACACTG-3ʹ

Reverse: 5ʹ-TGGTCGTTGAGGGCAAT-3ʹ