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Table 3 Variants of Italian SARS-CoV-2 complete genome

From: SARS-CoV-2 complete genome sequencing from the Italian Campania region using a highly automated next generation sequencing system

Gene name

Position

Mutation

Codon change

Amino acids change

No. Italian samples

Reported before

5′ UTR

241

 

C/T

 

21

Yes

orf1ab nsp1

586

Synonymous

ctT/ctC

L107

1

Yes

orf1ab nsp2

1117

Synonymous

atT/atC

I104

1

Yes

orf1ab nsp2

1191

Nonsynonymous

cCa/cTa

P129L

2

Yes

orf1ab nsp2

1524

Nonsynonymous

tGt/tAt

C240Y

1

Yes

orf1ab_nsp2

2488

Synonymous

ttC/ttT

F561

1

No

orf1ab nsp2

2498

Nonsynonymous

Gaa/Aaa

E565K

3

No

orf1ab nsp3

3037

Synonymous

ttC/ttT

F106

21

Yes

orf1ab nsp3

4235

Nonsynonymous

Aat/Gat

N506D

1

Yes

orf1ab nsp3

4255

Synonymous

ccG/ccT

P512

3

Yes

orf1ab nsp3

5812

Synonymous

gaC/gaT

D1031

1

Yes

orf1ab nsp3

6629

Nonsynonymous

Ctt/Ttt

L1304F

1

Yes

orf1ab nsp3

7094

Nonsynonymous

Act/Gct

T1459A

1

No

orf1ab nsp4

9157

Synonymous

ttT/ttC

F201

1

Yes

orf1ab nsp6

11,008

Synonymous

caC/caT

H12

1

No

orf1ab nsp6

11,083

Nonsynonymous

ttG/ttT

L37F

1

Yes

orf1ab nsp12

13,748

Nonsynonymous

Agt/Ggt

S103G

2

Yes

orf1ab nsp12

14,408

Synonymous

Cta/Tta

L323

21

Yes

orf1ab nsp12

15,243

Nonsynonymous

tGt/tAt

C601Y

1

Yes

orf1ab nsp13

16,456

Nonsynonymous

Tca/Cca

S74P

1

Yes

orf1ab nsp15

19,839

Synonymous

aaT/aaC

N73

2

Yes

orf1ab nsp15

20,380

Synonymous

Cta/Tta

L254

1

No

S

21,566

Nonsynonymous

Ttt/Ctt

F2L

1

No

S

21,575

Nonsynonymous

Ctt/Ttt

L5F

2

Yes

S

22,629

Nonsynonymous

aAg/aGg

K356R

1

No

S

23,403

Nonsynonymous

gAt/gGt

D614G

21

Yes

S

23,422

Synonymous

gtC/gtT

V620

2

Yes

S

23,569

Synonymous

ggT/ggC

G669

1

No

S

23,575

Synonymous

tgC/tgT

C671

1

Yes

S

23,589

Nonsynonymous

aCt/aTt

T676I

1

No

S

23,675

Nonsynonymous

Gtt/Ttt

V705F

1

Yes

S

23,849

Synonymous

Tta/Cta

L763

2

Yes

S

25,135

Nonsynonymous

aaG/aaT

K1191N

1

Yes

ORF3a

25,621

Nonsynonymous

Gtt/Ttt

V77F

1

No

UTR ORF3a-M

26,522

 

C/T

 

2

No

M

26,530

Nonsynonymous

gAt/gGt

D3G

3

Yes

M

26,858

Synonymous

ttC/ttT

F112

1

Yes

M

26,915

Synonymous

agA/agG

R131

1

No

M

27,046

Nonsynonymous

aCg/aTg

T175M

1

Yes

N

28,514

Nonsynonymous

Gat/Tat

D81Y

1

Yes

N

28,881

Nonsynonymous

aGG/aAA

R203K

4

Yes

N

28,882

Synonymous

AgG/agA

R203

4

Yes

N

28,883

Nonsynonymous

Gga/Cga

G204R

4

Yes

N

28,902

Nonsynonymous

aTg/aCg

M210T

1

Yes

N

28,985

Nonsynonymous

Ggc/Tgc

G238C

1

Yes

N

29,009

Nonsynonymous

Gtc/Atc

V246I

1

Yes

3′ UTR

29,686

 

C/T

 

2

Yes

3′ UTR

29,823

 

T/A

 

1

Yes