Table 2 Results of SARS-CoV-2 sequencing by Ion Torrent Genexus Integrated system
Sample ID | RNA quantification | No. viral copies sequenced (25 μl) | Total reads | Mapped reads (%) | % complete genome | Sequence name | |
|---|---|---|---|---|---|---|---|
Qubit ng/μl | Real time PCR copies/μl | ||||||
p01 | Too low | < 20 | – | 104,239 | 69,815 (66.9) | 100 | CAM-INTPas-14 |
p03 | Too low | 745 | 1863 | 1,710,451 | 1,645,209 (96.2) | 100 | CAM-INTPas-1 |
p04 | Too low | 60 | 150 | 431,728 | 323,912 (75.0) | 100 | CAM-INTPas-16 |
p06 | 1.28 | 51,184 | 127,960 | 2,467,092 | 2,323,266 (94.2) | 100 | CAM-INTPas-2 |
p07 | Too low | 462 | 1,155 | 1,190,112 | 1,127,406 (94.7) | 100 | CAM-INTPas-3 |
p09 | Too low | < 20 | – | 60,739 | 6391 (10.5) | 84 | a |
p11 | Too low | 1049 | 2623 | 1,207,327 | 1,133,720 (93.9) | 100 | CAM-INTPas-4 |
p12 | Too low | < 20 | – | 181,669 | 156,664 (86.2) | 100 | CAM-INTPas-15 |
p14 | 1.51 | < 20 | – | 79,427 | 2003 (2.5) | 63.0 | a |
p15 | Too low | < 20 | – | 317,588 | 7843 (2.4) | 95.0 | a |
p17 | Too low | 1223 | 3058 | 135,720 | 124,336 (91.6) | 100 | CAM-INTPas-21 |
p19 | 0.84 | 4180 | 10,405 | 748,062 | 724,073 (96.8) | 100 | CAM-INTPas-5 |
p24 | Too low | 848 | 2120 | 1,535,836 | 1,467,096 (95.5) | 100 | CAM-INTPas-6 |
p31 | 1.1 | 319 | 798 | 433,020 | 381,523 (88.1) | 100 | CAM-INTPas-7 |
p34 | 1.31 | 5435 | 13,588 | 1,502,575 | 1,461,532 (97.2) | 100 | CAM-INTPas-8 |
p36 | 1.19 | < 20 | – | 99,135 | 24,489 (24.7) | 95.0 | a |
p37 | Too low | 203,140 | 507,850 | 1,776,733 | 1,624,345 (91.4) | 100 | CAM-INTPas-9 |
p38 | Too low | 79,570 | 198,925 | 300,518 | 261,815 (87.1) | 100 | CAM-INTPas-10 |
p39 | 1.01 | 15,806 | 39,515 | 2,242,528 | 2,082,937 (92.8) | 100 | CAM-INTPas-11 |
p40 | Too low | 24 | 59 | 188,148 | 129,527 (68.8) | 100 | CAM-INTPas-17 |
p41 | Too low | 3435 | 8588 | 1,852,539 | 1,759,592 (94.9) | 100 | CAM-INTPas-12 |
p42 | Too low | < 20 | – | 781,315 | 656,572 (84.0) | 100 | CAM-INTPas-18 |
p44 | Too low | < 20 | – | 597,949 | 367,619 (61.5) | 100 | CAM-INTPas-19 |
p45 | Too low | 360 | 900 | 257,329 | 223,036 (86.6) | 100 | CAM-INTPas-20 |
p59 | Too low | 911 | 2278 | 1,428,577 | 1,383,059 (96.8) | 100 | CAM-INTPas-13 |
p60 | 5.52 | < 20 | – | 1,202,245 | 7406 (0.6) | 94.0 | a |
p61 | Too low | < 20 | – | 96,345 | 8783 (9.11) | 81.0 | a |