Table 2 Validation of the models with tRF-mRNA pairs reported by reporter assay
From: tRFTars: predicting the targets of tRNA-derived fragments
tRF | Gene | Whether target of tRF | References | Prediction of SVM-GA model | Prediction of conservative model | Prediction of probabilistic model | Prediction of miRNA model |
|---|---|---|---|---|---|---|---|
3027b | RPA1 | Yes | Maute et al. [16] | 0.58 (Yes) | 0 (No) | 0.06 (No) | Yes |
3009a | DGCR2 | Yes | Kuscu et al. [11] | 0.26 (No) | 0 (No) | 0.72 (No) | No |
3009a | SLC6A9 | Yes | Kuscu et al. [11] | 0.89 (Yes) | 0 (No) | 0.30 (No) | No |
3009a | SMAD1 | Yes | Kuscu et al. [11] | 0.73 (Yes) | 0.62 (Yes) | 0.03 (No) | No |
3009a | TBL1X | Yes | Kuscu et al. [11] | 0.10 (No) | 0 (No) | 0.32 (No) | No |
3009a | FER | Yes | Kuscu et al. [11] | 0.86 (Yes) | 0 (No) | 0.05 (No) | Yes |
5030c | LRP8 | Yes | Deng et al. [42] | 0.89 (Yes) | 0.47 (No) | 0.17 (No) | Yes |
3027b | STAG2 | No | Maute et al. [16] | 0.22 (No) | 1 (Yes) | 0.01 (No) | No |
3027b | NSD3 | No | Maute et al. [16] | 0.21 (No) | 1 (Yes) | 0.02 (No) | No |