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Table 5 Quantification results of 3 Rhesus exons of the different isolation methods using DNA Fetal Kit® RHD CE (BIORAD®)

From: Qualitative and quantitative comparison of cell-free DNA and cell-free fetal DNA isolation by four (semi-)automated extraction methods: impact in two clinical applications: chimerism quantification and noninvasive prenatal diagnosis

Isolation methods

Origin samples

Weeks

Expected results

Results

Ct exon 5

Ct exon 7

Ct exon 10

Ct exonegous DNA

Results

MagNA Pure 24 System

Sample 1

15

Positive

37.12

35.7

38.02

35.61

Positive

Sample 2

27

Positive

34.24

35.18

35.2

35.61

Positive

Sample 3

16

Negative

> 40

> 40

> 40

36.24

Negative

Control D+

ND

Positive

33.18

34.02

34.5

35.42

Positive

Control D−

ND

Negative

> 40

> 40

> 40

34.66

Negative

IDEAL

Sample 4

24

Negative

> 40

> 40

> 40

33.65

Negative

Sample 5

20

Positive

38.1

36.88

36.78

34.37

Positive

Sample 6

14

Positive

36.22

35.15

36.8

33.79

Positive

Control D+

ND

Positive

32.09

33.12

33.3

33.42

Positive

Control D−

ND

Negative

> 40

> 40

> 40

33.32

Negative

LabTurbo 24 AB

Sample 7

21

Positive

34.89

36

36.12

33.08

Positive

Sample 8

19

Negative

> 40

> 40

> 40

32.52

Negative

Sample 9

14

Positive

37.33

37.18

37.82

32.59

Positive

Control D+

ND

Positive

32.27

33.08

33.88

33.25

Positive

Control D-

ND

Negative

> 40

> 40

> 40

32.86

Negative

Chemagic 360D

Sample 10

18

Positive

37.63

37.45

37.87

37.22

Positive

Sample 11

18

Negative

> 40

> 40

> 40

35.64

Negative

Sample 12

21

Positive

36.34

38.22

40

38.39

Positive

Control D+

ND

Positive

35.07

35.44

37.07

38.66

Positive

Control D−

ND

Negative

> 40

> 40

> 40

39.38

Negative