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Table 3 Bacterial genera associated with NHAI

From: Respiratory microbiome profiles differ by recent hospitalization and nursing home residence in patients on mechanical ventilation

Genus FDR-OMiAT β-TMAT FDR-TMAT Estimate-RF FDR-RF FDR-Wilcoxon Beta-GLMM FDR-GLMM
Acinetobacter 0.5861 − 0.08 0.0807   NA 0.52 − 0.039 0.6165
Corynebacterium 0.1788 0.2 0.0004 3.21 0.3302 < 0.05 0.17 0.2166
Granulicatella 0.1911 − 0.18 0.0002 − 1.15 0.8524 < 0.05 − 0.318 0.0385
Staphylococcus 0.2129 − 0.14 0.023 − 2.22 0.8524 0.344 − 0.142 0.2166
Streptococcus 0.2129 − 0.09 0.0132 3.1 0.8524 0.0045 − 0.067 0.4439
Veillonella 0.5861 − 0.11 0.0101 − 0.39 0.8611 0.0045 − 0.136 0.2166
  1. FDR false discovery rate, OMiAT optimal microbiome-based association test, TMAT phylogenetic-tree-based microbiome association test, RF reference frame, GLMM generalized linear mixed model