Respiratory microbiome profiles differ by recent hospitalization and nursing home residence in patients on mechanical ventilation

Table 3 Bacterial genera associated with NHAI

Genus	FDR-OMiAT	β-TMAT	FDR-TMAT	Estimate-RF	FDR-RF	FDR-Wilcoxon	Beta-GLMM	FDR-GLMM
Acinetobacter	0.5861	− 0.08	0.0807		NA	0.52	− 0.039	0.6165
Corynebacterium	0.1788	0.2	0.0004	3.21	0.3302	< 0.05	0.17	0.2166
Granulicatella	0.1911	− 0.18	0.0002	− 1.15	0.8524	< 0.05	− 0.318	0.0385
Staphylococcus	0.2129	− 0.14	0.023	− 2.22	0.8524	0.344	− 0.142	0.2166
Streptococcus	0.2129	− 0.09	0.0132	3.1	0.8524	0.0045	− 0.067	0.4439
Veillonella	0.5861	− 0.11	0.0101	− 0.39	0.8611	0.0045	− 0.136	0.2166

FDR false discovery rate, OMiAT optimal microbiome-based association test, TMAT phylogenetic-tree-based microbiome association test, RF reference frame, GLMM generalized linear mixed model

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