Respiratory microbiome profiles differ by recent hospitalization and nursing home residence in patients on mechanical ventilation

Table 2 Bacterial genera associated with pneumonia

Genus	FDR-OMiAT	Beta TMAT	FDR-TMAT	Estimate-RF	FDR-RF	FDR-Wilcoxon	β-GLMM	FDR-GLMM
Acinetobacter	0.7832	0.02	0.7321	NA	NA	0.6809	0.014	0.7855
Corynebacterium	0.2791	0.1	0.0226	− 2.03	0.9985	0.005	0.102	0.4899
Granulicatella	0.7832	− 0.04	0.3564	− 1.89	0.9985	0.3817	− 0.104	0.4899
Staphylococcus	0.7832	− 0.01	0.8202	0.09	0.9985	0.9556	0.026	0.725
Streptococcus	0.2791	− 0.03	0.7321	0	0.9985	0.3817	− 0.04	0.6638
Veillonella	0.7832	− 0.03	0.708	0.35	0.9985	0.6809	− 0.065	0.5494

FDR false discovery rate, OMiAT optimal microbiome-based association test, TMAT phylogenetic-tree-based microbiome association test, RF reference frame, GLMM generalized linear mixed model

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