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Table 2 Bacterial genera associated with pneumonia

From: Respiratory microbiome profiles differ by recent hospitalization and nursing home residence in patients on mechanical ventilation

Genus FDR-OMiAT Beta TMAT FDR-TMAT Estimate-RF FDR-RF FDR-Wilcoxon β-GLMM FDR-GLMM
Acinetobacter 0.7832 0.02 0.7321 NA NA 0.6809 0.014 0.7855
Corynebacterium 0.2791 0.1 0.0226 − 2.03 0.9985 0.005 0.102 0.4899
Granulicatella 0.7832 − 0.04 0.3564 − 1.89 0.9985 0.3817 − 0.104 0.4899
Staphylococcus 0.7832 − 0.01 0.8202 0.09 0.9985 0.9556 0.026 0.725
Streptococcus 0.2791 − 0.03 0.7321 0 0.9985 0.3817 − 0.04 0.6638
Veillonella 0.7832 − 0.03 0.708 0.35 0.9985 0.6809 − 0.065 0.5494
  1. FDR false discovery rate, OMiAT optimal microbiome-based association test, TMAT phylogenetic-tree-based microbiome association test, RF reference frame, GLMM generalized linear mixed model