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Table 1 Characterization of putative deleterious missense variants in ACE2

From: Investigation of the genetic variation in ACE2 on the structural recognition by the novel coronavirus (SARS-CoV-2)

rsID

Position (hg19)

Ref

Alt

AA changea

Enrichedh

AF

Df

Sg

Combined

African

Latino

Asianb

Europeanc

Europeand

Asiane

rs147311723

15582265

G

A

Leu731Phe

N/A

1.4 × 10−3

0.014

4.8 × 10−4

0

0

3.3 × 10−5

0

6

N

rs148771870

15607532

C

T

Gly211Arg

N/A

1.3 × 10−3

2.7 × 10−4

2.1 × 10−4

0

1.6 × 10−3

1.9 × 10−3

1.9 × 10−3

2

Y

rs191860450

15593829

T

C

Ile468Val

N/A

8.4 × 10−4

0

0

0.011

0

2.2 × 10−5

5.6 × 10−5

4

Y

rs149039346

15584416

A

G

Ser692Pro

N/A

5.6 × 10−4

5.8 × 10−3

3.6 × 10−5

0

0

2.2 × 10−5

5.3 × 10−5

4

N

rs138390800

15599392

T

C

Lys341Arg

N/A

4.0 × 10−4

3.9 × 10−3

1.8 × 10−4

0

0

0

0

2

Y

rs372272603

15607508

G

A

Arg219Cys

N/A

3.5 × 10−4

1.6 × 10−4

0

0

0

7.0 × 10−4

1.6 × 10−4

6

Y

rs73635825

15618980

A

G

Ser19Pro

Y

3.1 × 10−4

3.3 × 10−3

0

0

0

0

0

3

Yh

rs142443432

15607546

T

C

Asp206Gly

N/A

3.0 × 10−4

1.1 × 10−4

3.6 × 10−5

0

0

6.3 × 10−4

0

2

Y

rs751603885

15584401

T

C

Arg697Gly

N/A

2.5 × 10−4

0

0

0

0

0

2.4 × 10−3

4

N

rs373025684

15590348

G

C

Ser547Cys

N/A

2.1 × 10−4

0

1.4 × 10−4

0

5.4 × 10−5

3.9 × 10−4

0

6

Y

rs142984500

15596376

T

C

His378Arg

Y

8.8 × 10−5

0

0

0

0

1.9 × 10−4

0

6

Yh

rs759590772

15607507

C

T

Arg219His

NA

9.8 × 10−5

0

0

0

0

1.2 × 10−5

8.9 × 10−4

5

Y

  1. “a”: AA refers to amino acid
  2. “b”: East Asian
  3. “c”: Finnish
  4. “d”: European not including Finnish
  5. “e”: South Asian
  6. “f”: Number of tools predicted the variant to be deleterious; the top four variants with predicted functional disruptions highlighted in bold
  7. “g”: “Y” refers to The variant likely affecting the protein structure of ACE2, otherwise “N”
  8. “h”: Deep mutagenesis experimental data to show Ser19Pro and His378Arg interactions with SARS-Cov-2 virus from the previous literature [16]