Fig. 3

lcRNA-seq analyses between sample groups after application of CLEAR. a CLEAR transcripts shared between samples of each input mass group. The red bars depict the number of CLEAR transcripts found in all 6 samples (replicates in both CD5+ and CD5− groups); bLeft: CLEAR transcripts overlap between 10-pg and 100-pg input mass samples; Right: CLEAR transcripts overlap between 100-pg and 1000-pg input mass samples; c DEG counts between CD5+ vs. CD5− cell types using only the shared CLEAR transcripts. The inset shows the data from Fig. 1b without the application of CLEAR; dBottom: Overlap of DEGs from the 100-pg and 1000-pg inputs (top repeats data from Fig. 1c without CLEAR); e PCA plots separating CD5+ and CD5− groups for all input masses using only CLEAR transcripts (inset repeats data from Fig. 1d without CLEAR). PC principal component