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Table 5 Representative interactions between miRNAs and mRNAs for prostate cancer

From: Molecular network-based identification of competing endogenous RNAs and mRNA signatures that predict survival in prostate cancer

miRNA mRNA
hsa-mir-122-5p HECW2, DUSP2, ORC2, CLIC4, SLC7A1, BROX, SLC52A2, PKM, NFX1, ANKRD13C, PRKRA, GNPDA2, GYS1, CCNG1, PIP4K2A, RBL1, RBM43, CCDC43, TNRC6A, ALDOA, FAM117B, G6PC3, NPEPPS, TGFBRAP1, HECTD3, SLC9A1, AKT3, PHF14, GALNT3, NT5C3A, P4HA1, FUNDC2
hsa-mir-137 CTBP1, MITF, HNRNPDL, SLC1A5, EOGT, PTGS2, NCOA3, GLO1, YTHDF3, GLIPR1, FMNL2, RREB1, SNRK, E2F6, KIT, DR1, YBX1, GIGYF1, SFT2D3, RORA, AGO4, NCOA2, CSE1L, LIMCH1, PXN, PAPD7, KDM1A, ESRRA, ZNF326
hsa-mir-182-5p FLOT1, SESN2, BDNF, PLEKHA8, MTSS1, CITED2, CLOCK, MITF, NR3C1, TCEAL7, FBXW7, THBS1, EVI5, FGF9, FOXO3, KDM5A, CHL1, NPTX1, ADCY6, ULBP2, HOXA9, LSM14A, NUFIP2, PRKAA2, RARG, BRWD1, CYLD, TP53INP1, FOXF2, RECK
hsa-mir-183-5p GLUL, ARHGAP21, FOXN2, LRP6, SRSF2, KIF2A, RCN2, TMED7, NR3C1, FOXO1, SH3D19, PPP2CB, KLHL24, EZR, RALGDS, SUCO, AKAP12, FAM217B, ZEB1, CTDSPL, KLRD1, ARFGAP2, KIF5C, CCNB1, NUFIP2, DAP, ITGB1, KLHL23, PDCD4, FAM175B, CELF1, IDH2, GNG5, PRRC1, PDCD6
hsa-mir-184 LRRC8A
hsa-mir-187-3p DYRK2
hsa-mir-204-5p ZFHX3, CREB5, CCNT2, RAB22A, CAPRIN1, M6PR, USP47, TGFBR2, ARAP2, AKAP1, MAPRE2, HAS2, HNRNPA2B1, JARID2, KLHL40, ANGPTL2, PHF13, SH3PXD2A, SAMD5, AP1S2, HOXC8, MAP1LC3B, SP1, RAB40B, RUNX2, FOXC1, COL5A3, MBNL1, SIRT1, CHRDL1, PPP3R1, IKZF2, FARP1, SGPL1, ARHGAP29, PRLR, ZCCHC24, PRDM2, AP1S1, TPPP, ANKFY1, CDH2, ITPR1, SERINC3, SLC43A1, RAB10, WWC3, ANKRD13A, EDEM1, ZBTB22, NPTX1, SLC22A6, ALPL, SYNJ2BP, TMTC2, NTRK2, BCL2, PTPRT, THRB, ELOVL6, SPOP, TCF12, EZR, CHORDC1, HCAR2, IL11, SLC39A9, BIRC2
hsa-mir-372-3p ZNF532, WEE1, LATS2, SLC22A23, DUSP2, RAB11FIP1, TMEM100, FAM102B, SLAIN2, NR2C2, FEM1C, KLF3, MED17, DPP8, HABP4, MBNL2, ARID4B, PLA2G12A, ATAD2, PFKP, ULK1, CLIP4, TGFBR2, MKNK2, CUL3, ZNF385A, UNK, SERF1B, YOD1, TFAP4, SAR1B, PSD3, CADM2, DAZAP2, ZFYVE26, SIK1, IGF1R, TAOK1, IRF2, MIXL1, SBNO1, SUZ12, TXNIP, SUCO, ELAVL2, INO80D, GALNT3, LEFTY1, BTG1, MPP5, TMEM19, ELK4, HIP1, CREBRF, REST, TIMM17A, FOXJ2, OSTM1, MINK1, RHOC, RAB22A, IRAK4, LIMA1, HMBOX1, SH3GLB1, GNB5, SLC7A11, CCSAP, TNKS2, TRPS1, PAK2, KREMEN1, PTPDC1, NFIB, SERF1A, FBXL7, CPT1A, TNFAIP1, KPNA2
hsa-mir-375 ELAVL4, RLF
hsa-mir-506-3p CD151, PI4K2B, NUFIP2, TMEM41A, SLC16A1, PARP16, PRR14L, CHSY1, SFT2D3, PTBP3, LRRC1, NEK9, GXYLT1, SNX18, AMOTL1, VIM, MYO10, SCAMP4, PTBP1, ZWINT, CREBRF, LRRC58, SNAI2
hsa-mir-93-5p MKNK2, KLF3, CDKN1A, GID4, SCAMP2, MAP3K2, BRMS1L, EPS15L1, SAMD12, ZNF800, PANK3, HEG1, CEP97, PPP3R1, TMEM167A, ZNF280B, ORMDL3, ZBTB18, CAPRIN2, RB1, PAFAH1B1, FBXO21, DNAJC27, FCHO2, CCDC71L, PRRG1, KLHL20, PARD6B, HAUS8, MASTL, FNBP1L, NIPA1, NRIP3, CENPQ, BMP8B, SERF1B, POLQ, RCCD1, NETO2, JAK1, NR2C2, RBBP7, PURA, MTF1, DDHD1, NKIRAS1, TET3, FRS2, MED12L, PTPN4, ADARB1, NAGK, SMAD5, AGO1, PTGFRN, HSPA8, FBXO48, PIP4K2A, TMEM64, FJX1, SOWAHC, ANKH, RRAGD, PGP, CAMTA1, DUSP2, ZBTB9, FAM57A, ZADH2, KLHL28, C9orf40, ARHGAP12, SQSTM1, RABEP1, REST, RUNX3, ARHGAP1, SLAIN2, SGTB, BTBD7, SERF1A, F3, STK17B, SFXN5, RAP2C, ZBTB41, ITCH, SEMA4B, KATNAL1, UBE2Q2, RAB10, SALL3, TMEM242, CYBRD1, RAB11FIP1, LYSMD3, TRIP10, GINS4, FAM210A, SEMA7A, STX6, KAT2B, DAB2, STAT3, ENPP5, KLF10, PPP6C, PFKP, OSTM1, RBM12B, IKZF4, DENND5B, FAM102A, CEP170, KIAA0513, TBC1D20, CEP57, CNOT6L, SACS, ZBTB4, ABHD2, POLR3G, ZFP91, FBXO31, KPNA2, FIGNL1, C3orf38, E2F5, TMEM168, RAB22A, KIAA1191, ITGB8, CRK, ZNFX1, CNOT4, GBF1, PLXNA1, TNFAIP1, MAPRE3, SHOC2, HIP1, PIP4K2C, ASF1A, LASP1, EZH1, NABP1, ANKRD33B, HBP1, BMPR2, ZNF107, USP3, RRM2, MFN2, TFAM, HMGB3, LIMA1, RHOC, EPHA4, PLEKHO2, SMOC1, RPS6KA5, ZFYVE9, UXS1, EIF5A2, OXR1, UNKL, KMT2B, FYCO1, MAP3K3, PRR14L, FOXJ2, CNOT7, TANC1, PGM2L1, VPS26A, MCL1, RAPGEF4, KIAA0922, GNB5, VPS13C, EGR2, GPATCH2, ARHGAP35, FAXC, KLF9, EPHA7, SYBU, REEP3, ATL3, CLOCK, ANKRD13C, CAPN15, SOX4, SKIL, NPAT, ATAD2, U2SURP, SESN3, RPF2, FAM126B, FAM46C, KIF23, AKTIP, MIDN, TMEM123, ATG16L1, TOPORS, EGLN3, RAB5B, ABCA1, FOXQ1, NRBP1, TGFBR2, TNKS1BP1, PITPNA, GOLGA1, MORF4L1, SCAMP5, SERTAD2, HAS2, SPOPL, ELK4, RGMB, TMEM127, RNF145, NIN, TNKS2, SLC2A4, CHAF1A, CASP2, TMEM138, WDR37, FAM117B, USP32, CERCAM, WAC, TOLLIP, CFL2, SPRED1, ARAP2, DNM1L, TXLNA, RPA2, MTMR3, SGMS1, TWF1, TP53INP1, C7orf43, CDC37L1, TXNIP, E2F1, GPR137C, TRIM37, YOD1, CSNK1G1, PPP6R3, GNS, FRMD6, PHF6, ZNF202, PLS1, BICD2, CCSER2, CMPK1, SRSF2, CIT, CRY2, SNX16, HIF1A, EIF4H, RUNDC1, C14orf28, LPGAT1, CCND1, 2-Sep, PXK, RORA, NDEL1, VLDLR, LYST, TNFRSF21, UNK, ANKIB1, CREB1, STK11, ATG14, SLC16A9, MLXIP, SIKE1, FOXJ3, GOLGA2, PPP1R3B, ZFYVE26, MYO19, IRF1, BTG3, KIAA1147, BNIP2, FEM1C, PKD2, ZNF217, MINK1, PHTF2, GIGYF1, ZNF148, ANKRD50, IRAK4, ARID4B, SLK, ERAP1, NFAT5, ANKRD12, ULK1, ZC3H12C, PPP1R15B, FBXL5, PAPOLA, TMEM245, CCNG2, DNAJB9, RLIM, DPYSL2, TADA2B, ANKRD52, PTPDC1, KLF11, PDZD11, SASH1, CHIC1, ANKRD29, IFNAR1, EFCAB14, CHD9, OCRL, OSR1, NUP35, ACSL4, RUFY2, ZNF532, MAPK1, SSX2IP, HMBOX1, DDX5, UBXN2A, PKNOX1, NCOA3, LDLR, SNTB2, GAB1, USP28, UBE2J1, DUSP8, MCC, BTBD10, FAM129A, E2F2, ELAVL2, PDE3B, SLC29A2, GPAM, MAPK9, TUSC2, SH3PXD2A, SSH2, NACC2, APBB2, ZBTB7A, CLIP4, TMBIM6, NHLRC3, MFSD8, PTP4A1, SIK1, TSG101, PBX3, SUCO, DYNC1LI2, BBX, PHC3, LAPTM4A, NPAS2, STYX, EEA1, SLC22A23, NAA30
hsa-mir-96-5p JAZF1, SLC25A25, KRAS, CNNM3, MAP3K3, EDEM1, SLC1A1, SNX7, STK17B, FOXO1, TMEM170B, APPL1, PRKAR1A, MBD4, PRDM16, ADCY6, ZEB1, EIF4EBP2, SCARB1, REV1, TSKU, ABCD1, SNX16, PPP1R9B, TRIB3, NHLRC3, PRKCE, DDIT3, MED1, CASP2, SIN3B, CCNG1, FRS2, PROK2, DDAH1, ALK, ASH1L, MORF4L1, SLC39A1