TY - JOUR AU - Sanger, F. AU - Nicklen, S. AU - Coulson, A. R. PY - 1977 DA - 1977// TI - DNA sequencing with chain-terminating inhibitors JO - Proc Natl Acad Sci USA VL - 74 UR - https://doi.org/10.1073/pnas.74.12.5463 DO - 10.1073/pnas.74.12.5463 ID - Sanger1977 ER - TY - JOUR AU - Meyerson, M. AU - Gabriel, S. AU - Getz, G. PY - 2010 DA - 2010// TI - Advances in understanding cancer genomes through second-generation sequencing JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2841 DO - 10.1038/nrg2841 ID - Meyerson2010 ER - TY - JOUR AU - Schadt, E. E. AU - Turner, S. AU - Kasarskis, A. PY - 2010 DA - 2010// TI - A window into third-generation sequencing JO - Hum Mol Genet VL - 19 UR - https://doi.org/10.1093/hmg/ddq416 DO - 10.1093/hmg/ddq416 ID - Schadt2010 ER - TY - JOUR AU - Wei, X. AU - Ju, X. AU - Yi, X. AU - Zhu, Q. AU - Qu, N. AU - Liu, T. PY - 2011 DA - 2011// TI - Identification of sequence variants in genetic disease using genes using targeted next generation sequencing JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0029500 DO - 10.1371/journal.pone.0029500 ID - Wei2011 ER - TY - JOUR AU - Smith, B. C. AU - McAndrew, T. AU - Chen, Z. AU - Harari, A. AU - Barris, D. M. AU - Viswanathan, S. PY - 2012 DA - 2012// TI - The cervical microbiome over 7 years and a comparison of methodologies for its characterization JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0040425 DO - 10.1371/journal.pone.0040425 ID - Smith2012 ER - TY - JOUR AU - Ozretic, L. AU - Heukamp, L. C. AU - Odenthal, M. AU - Buettner, R. PY - 2012 DA - 2012// TI - The role of molecular diagnostics in cancer diagnosis and treatment JO - Onkologie VL - 35 UR - https://doi.org/10.1159/000334823 DO - 10.1159/000334823 ID - Ozretic2012 ER - TY - JOUR AU - Luo, H. AU - Sun, C. AU - Sun, Y. AU - Wu, Q. AU - Li, Y. AU - Song, J. PY - 2011 DA - 2011// TI - Analysis of the transcriptome of Panax notoginseng root uncovers putative triterpene saponin biosynthetic genes and genetic markers JO - BMC Genom VL - 12 UR - https://doi.org/10.1186/1471-2164-12-S5-S5 DO - 10.1186/1471-2164-12-S5-S5 ID - Luo2011 ER - TY - JOUR AU - Kandoth, C. AU - McLellan, M. D. AU - Vandin, F. AU - Ye, K. AU - Niu, B. AU - Lu, C. PY - 2013 DA - 2013// TI - Mutational landscape and significance across 12 major cancer types JO - Nature VL - 503 UR - https://doi.org/10.1038/nature12634 DO - 10.1038/nature12634 ID - Kandoth2013 ER - TY - JOUR AU - Ding, L. AU - Ley, T. J. AU - Larson, D. E. AU - Miller, C. A. AU - Koboldt, D. C. AU - Welch, J. S. PY - 2012 DA - 2012// TI - Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing JO - Nature VL - 481 UR - https://doi.org/10.1038/nature10738 DO - 10.1038/nature10738 ID - Ding2012 ER - TY - JOUR AU - Li, M. M. AU - Datto, M. AU - Duncavage, E. J. AU - Kulkarni, S. AU - Lindeman, N. I. AU - Roy, S. PY - 2017 DA - 2017// TI - Standards and guidelines for the interpretation and reporting of sequence variants in cancer: a joint consensus recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists JO - J Mol Diagn VL - 19 UR - https://doi.org/10.1016/j.jmoldx.2016.10.002 DO - 10.1016/j.jmoldx.2016.10.002 ID - Li2017 ER - TY - STD TI - Ferlay J, Soerjomataram I, Ervik M, Dikshit R, Eser S, Mathers C, Rebelo M, Parkin DM, Bray F. GLOBOCAN 2012 v.1.0 cancer incidence and mortality worldwide. Lyon: IARC CancerBase, International Agency for Research on Cancer, 2017, No. 11. http://globocan.iarc.fr. Accessed 15 Oct 2017. UR - http://globocan.iarc.fr ID - ref11 ER - TY - JOUR AU - Cirulli, E. T. AU - Goldstein, D. B. PY - 2010 DA - 2010// TI - Uncovering the roles of rare variants in common disease through whole genome sequencing JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2779 DO - 10.1038/nrg2779 ID - Cirulli2010 ER - TY - JOUR AU - Guan, Y. F. AU - Li, G. R. AU - Wang, R. J. AU - Yi, Y. T. AU - Yang, L. AU - Jiang, D. PY - 2012 DA - 2012// TI - Application of next generations sequencing in clinical oncology to advance personalized treatment of cancer JO - Chin J Cancer VL - 31 UR - https://doi.org/10.5732/cjc.012.10216 DO - 10.5732/cjc.012.10216 ID - Guan2012 ER - TY - JOUR AU - Hodges, E. AU - Xuan, Z. AU - Balija, V. AU - Kramer, M. AU - Molla, M. N. AU - Smith, S. W. PY - 2007 DA - 2007// TI - Genome-wide in situ exon capture for selective resequencing JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng.2007.42 DO - 10.1038/ng.2007.42 ID - Hodges2007 ER - TY - JOUR AU - Sultan, M. AU - Schulz, M. H. AU - Richard, H. AU - Magen, A. AU - Klingenhoff, A. AU - Scherf, M. PY - 2008 DA - 2008// TI - A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome JO - Science VL - 321 UR - https://doi.org/10.1126/science.1160342 DO - 10.1126/science.1160342 ID - Sultan2008 ER - TY - JOUR AU - Ju, Y. S. AU - Kim, J. I. AU - Kim, S. AU - Hong, D. AU - Park, H. AU - Shin, J. Y. PY - 2011 DA - 2011// TI - Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals JO - Nat Genet VL - 43 UR - https://doi.org/10.1038/ng.872 DO - 10.1038/ng.872 ID - Ju2011 ER - TY - JOUR AU - Fu, Y. AU - Sun, Y. AU - Li, Y. AU - Li, J. AU - Rao, X. AU - Chen, C. PY - 2011 DA - 2011// TI - Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.115295.110 DO - 10.1101/gr.115295.110 ID - Fu2011 ER - TY - JOUR AU - Lee, C. Y. AU - Chiu, Y. C. AU - Wang, L. B. AU - Kuo, Y. L. AU - Chuang, E. Y. AU - Lai, L. C. PY - 2013 DA - 2013// TI - Common applications of next-generation sequencing technologies in genomic research JO - Transl Cancer Res VL - 2 ID - Lee2013 ER - TY - STD TI - http://www.roche.com. 1 Oct 2017. UR - http://www.roche.com ID - ref19 ER - TY - STD TI - http://www.illumina.com. 1 Oct 2017. UR - http://www.illumina.com ID - ref20 ER - TY - STD TI - http://www.thermofisher.com. 1 Oct 2017. UR - http://www.thermofisher.com ID - ref21 ER - TY - JOUR AU - Hoppman-Chaney, N. AU - Peterson, L. M. AU - Klee, E. W. AU - Middha, S. AU - Courteau, L. K. AU - Ferber, M. J. PY - 2010 DA - 2010// TI - Evaluation of oligonucleotide sequence capture arrays and comparison of next-generation sequencing platforms for use in molecular diagnostics JO - Clin Chem VL - 56 UR - https://doi.org/10.1373/clinchem.2010.145441 DO - 10.1373/clinchem.2010.145441 ID - Hoppman-Chaney2010 ER - TY - JOUR AU - Eid, J. AU - Fehr, A. AU - Gray, J. AU - Luong, K. AU - Lyle, J. AU - Otto, G. PY - 2009 DA - 2009// TI - Real-time DNA sequencing from single polymerase molecules JO - Science VL - 323 UR - https://doi.org/10.1126/science.1162986 DO - 10.1126/science.1162986 ID - Eid2009 ER - TY - STD TI - http://www.pacb.com. 1 Oct 2017. UR - http://www.pacb.com ID - ref24 ER - TY - STD TI - Jain M, Olsen HE, Paten B, Akeson M. The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community. Genome Biol. 2016;17(1):239. Erratum in: Genome Biol. 2016;17(1):256. ID - ref25 ER - TY - JOUR AU - Loose, M. W. PY - 2017 DA - 2017// TI - The potential impact of nanopore sequencing on human genetics JO - Hum Mol Genet VL - 26 UR - https://doi.org/10.1093/hmg/ddx287 DO - 10.1093/hmg/ddx287 ID - Loose2017 ER - TY - STD TI - https://nanoporetech.com. 1 Oct 2017. UR - https://nanoporetech.com ID - ref27 ER - TY - STD TI - http://www.qiagen.com, http://www.genereaderNGS.com. 1 Oct 2017. UR - http://www.genereaderNGS.com ID - ref28 ER - TY - JOUR AU - Darwanto, A. AU - Hein, A. M. AU - Strauss, S. AU - Kong, Y. AU - Sheridan, A. AU - Richards, D. PY - 2017 DA - 2017// TI - Use of the QIAGEN GeneReader NGS system for detection of KRAS mutations, validated by the QIAGEN Therascreen PCR kit and alternative NGS platform JO - BMC Cancer VL - 17 UR - https://doi.org/10.1186/s12885-017-3328-z DO - 10.1186/s12885-017-3328-z ID - Darwanto2017 ER - TY - STD TI - https://bionanogenomics.com. 1 Oct 2017. UR - https://bionanogenomics.com ID - ref30 ER - TY - JOUR AU - Jaratlerdsiri, W. AU - Chan, E. K. F. AU - Petersen, D. C. AU - Yang, C. AU - Croucher, P. I. AU - Bornman, M. S. R. AU - Sheth, P. AU - Hayes, V. M. PY - 2017 DA - 2017// TI - Next generation mapping reveals novel large genomic rearrangements in prostate cancer JO - Oncotarget VL - 8 ID - Jaratlerdsiri2017 ER - TY - JOUR AU - Goodwin, S. AU - McPherson, J. D. AU - McCombie, W. R. PY - 2016 DA - 2016// TI - Coming of age: ten years of next-generation sequencing technologies JO - Nat Rev Genet VL - 17 UR - https://doi.org/10.1038/nrg.2016.49 DO - 10.1038/nrg.2016.49 ID - Goodwin2016 ER - TY - JOUR AU - Loman, N. J. AU - Misra, R. V. AU - Dallman, T. J. AU - Constantinidou, C. AU - Gharbia, S. E. AU - Wain, J. PY - 2012 DA - 2012// TI - Performance comparison of benchtop high-throughput sequencing platforms JO - Nat Biotechnol VL - 30 UR - https://doi.org/10.1038/nbt.2198 DO - 10.1038/nbt.2198 ID - Loman2012 ER - TY - JOUR AU - Claesson, M. J. AU - Wang, Q. AU - O’Sullivan, O. AU - Greene-Diniz, R. AU - Cole, J. R. AU - Ross, R. P. PY - 2010 DA - 2010// TI - Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq873 DO - 10.1093/nar/gkq873 ID - Claesson2010 ER - TY - JOUR AU - Harismendy, O. AU - Ng, P. C. AU - Strausberg, R. L. AU - Wang, X. AU - Stockwell, T. B. AU - Beeson, K. Y. PY - 2009 DA - 2009// TI - Evaluation of next generation sequencing platforms for population targeted sequencing studies JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-3-r32 DO - 10.1186/gb-2009-10-3-r32 ID - Harismendy2009 ER - TY - JOUR AU - Bentley, D. R. AU - Balasubramanian, S. AU - Swerdlow, H. P. AU - Smith, G. P. AU - Milton, J. AU - Brown, C. G. PY - 2008 DA - 2008// TI - Accurate whole human genome sequencing using reversible terminator chemistry JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07517 DO - 10.1038/nature07517 ID - Bentley2008 ER - TY - JOUR AU - Dohm, J. C. AU - Lottaz, C. AU - Borodina, T. AU - Himmelbauer, H. PY - 2008 DA - 2008// TI - Substantial biases in ultra-short read data sets from high-throughput DNA sequencing JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn425 DO - 10.1093/nar/gkn425 ID - Dohm2008 ER - TY - JOUR AU - Nakamura, K. AU - Oshima, T. AU - Morimoto, T. AU - Ikeda, S. AU - Yoshikawa, H. PY - 2011 DA - 2011// TI - Sequence-specific error profile of Illumina sequencers JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr344 DO - 10.1093/nar/gkr344 ID - Nakamura2011 ER - TY - JOUR AU - Carneiro, M. O. AU - Russ, C. AU - Ross, M. G. AU - Gabriel, S. B. AU - Nusbaum, C. AU - DePristo, M. A. PY - 2012 DA - 2012// TI - Pacific biosciences sequencing technology for genotyping and variation discovery in human data JO - BMC Genom VL - 5 UR - https://doi.org/10.1186/1471-2164-13-375 DO - 10.1186/1471-2164-13-375 ID - Carneiro2012 ER - TY - JOUR AU - Koren, S. AU - Schatz, M. C. AU - Walenz, B. P. AU - Martin, J. AU - Howard, J. T. AU - Ganapathy, G. AU - Wang, Z. PY - 2012 DA - 2012// TI - Hybrid error correction and de novo assembly of single-molecule sequencing reads JO - Nat Biotechnol VL - 30 UR - https://doi.org/10.1038/nbt.2280 DO - 10.1038/nbt.2280 ID - Koren2012 ER - TY - JOUR AU - Frey, K. G. AU - Herrera-Galeano, J. E. AU - Redden, C. L. AU - Luu, T. V. AU - Servetas, S. L. AU - Mateczun, A. J. PY - 2014 DA - 2014// TI - Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood JO - BMC Genom VL - 4 UR - https://doi.org/10.1186/1471-2164-15-96 DO - 10.1186/1471-2164-15-96 ID - Frey2014 ER - TY - JOUR AU - Quail, M. AU - Smith, M. E. AU - Coupland, P. AU - Otto, T. D. AU - Harris, S. R. AU - Connor, T. R. PY - 2012 DA - 2012// TI - A tale of three next generation sequencing platforms: comparison of Ion Torrent, pacific biosciences and illumina MiSeq sequencers JO - BMC Genom VL - 13 UR - https://doi.org/10.1186/1471-2164-13-341 DO - 10.1186/1471-2164-13-341 ID - Quail2012 ER - TY - JOUR AU - Liu, L. AU - Li, Y. AU - Li, S. AU - Hu, N. AU - He, Y. AU - Pong, R. PY - 2012 DA - 2012// TI - Comparison of next-generation sequencing systems JO - J Biomed Biotechnol. VL - 2012 ID - Liu2012 ER - TY - JOUR AU - Russo, G. AU - Patrignani, A. AU - Poveda, L. AU - Hoehn, F. AU - Scholtka, B. AU - Schlapbach, R. PY - 2015 DA - 2015// TI - Highly sensitive, non-invasive detection of colorectal cancer mutations using single molecule, third generation sequencing JO - Appl Transl Genom VL - 16 UR - https://doi.org/10.1016/j.atg.2015.08.006 DO - 10.1016/j.atg.2015.08.006 ID - Russo2015 ER - TY - JOUR AU - Misyura, M. AU - Zhang, T. AU - Sukhai, M. A. AU - Thomas, M. AU - Garg, S. AU - Kamel-Reid, S. PY - 2016 DA - 2016// TI - Comparison of next-generation sequencing panels and platforms for detection and verification of somatic tumor variants for clinical diagnostics JO - J Mol Diagn VL - 18 UR - https://doi.org/10.1016/j.jmoldx.2016.06.004 DO - 10.1016/j.jmoldx.2016.06.004 ID - Misyura2016 ER - TY - JOUR AU - Mu, W. AU - Lu, H. M. AU - Chen, J. AU - Li, S. AU - Elliott, A. M. PY - 2016 DA - 2016// TI - Sanger confirmation is required to achieve optimal sensitivity and specificity in next-generation sequencing panel testing JO - J Mol Diagn VL - 18 UR - https://doi.org/10.1016/j.jmoldx.2016.07.006 DO - 10.1016/j.jmoldx.2016.07.006 ID - Mu2016 ER - TY - JOUR AU - Hinrichs, J. W. AU - Blokland, W. T. AU - Moons, M. J. AU - Radersma, R. D. AU - Radersma-van Loon, J. H. AU - Voijs, C. M. PY - 2015 DA - 2015// TI - Comparison of next-generation sequencing and mutation-specific platforms in clinical practice JO - Am J Clin Pathol VL - 143 UR - https://doi.org/10.1309/AJCP40XETVYAMJPY DO - 10.1309/AJCP40XETVYAMJPY ID - Hinrichs2015 ER - TY - JOUR AU - Labianca, R. AU - Beretta, G. D. AU - Kildani, B. AU - Milesi, L. AU - Merlin, F. AU - Mosconi, S. PY - 2010 DA - 2010// TI - Colon cancer JO - Crit Rev Oncol Hematol VL - 74 UR - https://doi.org/10.1016/j.critrevonc.2010.01.010 DO - 10.1016/j.critrevonc.2010.01.010 ID - Labianca2010 ER - TY - JOUR AU - Blarigan, E. L. AU - Meyerhardt, J. A. PY - 2015 DA - 2015// TI - Role of physical activity and diet after colorectal cancer diagnosis JO - J Clin Oncol VL - 16 UR - https://doi.org/10.1200/JCO.2014.59.7799 DO - 10.1200/JCO.2014.59.7799 ID - Blarigan2015 ER - TY - JOUR AU - Yang, B. AU - Jacobs, E. J. AU - Gapstur, S. M. AU - Stevens, V. AU - Campbell, P. T. PY - 2015 DA - 2015// TI - Active smoking and mortality among colorectal cancer survivors: the Cancer Prevention Study II nutrition cohort JO - J Clin Oncol VL - 8 UR - https://doi.org/10.1200/JCO.2014.58.3831 DO - 10.1200/JCO.2014.58.3831 ID - Yang2015 ER - TY - JOUR AU - Sebastian, S. AU - Hernandez, V. AU - Myrelid, P. AU - Kariv, R. AU - Tsianos, E. AU - Toruner, M. PY - 2014 DA - 2014// TI - Colorectal cancer in inflammatory bowel disease: results of the 3rd ECCO pathogenesis scientific workshop (I) JO - J Crohns Colitis VL - 1 UR - https://doi.org/10.1016/j.crohns.2013.04.008 DO - 10.1016/j.crohns.2013.04.008 ID - Sebastian2014 ER - TY - JOUR AU - Kalla, R. AU - Ventham, N. T. AU - Satsangi, J. AU - Arnott, I. D. PY - 2014 DA - 2014// TI - Crohn’s disease JO - BMJ VL - 19 UR - https://doi.org/10.1136/bmj.g6670 DO - 10.1136/bmj.g6670 ID - Kalla2014 ER - TY - JOUR AU - Liu, L. AU - Lemmens, V. E. AU - Hingh, I. H. AU - Vries, E. AU - Roukema, J. A. AU - Leerdam, M. E. PY - 2013 DA - 2013// TI - Second primary cancers in subsites of colon and rectum in patients with previous colorectal cancer JO - Dis Colon Rectum VL - 2 ID - Liu2013 ER - TY - JOUR AU - Kastrinos, F. AU - Syngal, S. PY - 2011 DA - 2011// TI - Inherited colorectal cancer syndromes JO - Cancer J VL - 6 UR - https://doi.org/10.1097/PPO.0b013e318237e408 DO - 10.1097/PPO.0b013e318237e408 ID - Kastrinos2011 ER - TY - JOUR AU - Fodde, R. PY - 2002 DA - 2002// TI - The APC gene in colorectal cancer JO - Eur J Cancer VL - 38 UR - https://doi.org/10.1016/S0959-8049(02)00040-0 DO - 10.1016/S0959-8049(02)00040-0 ID - Fodde2002 ER - TY - JOUR AU - Vasen, H. F. AU - Blanco, I. AU - Aktan-Collan, K. AU - Gopie, J. P. AU - Alonso, A. AU - Aretz, S. PY - 2013 DA - 2013// TI - Revised guidelines for the clinical management of Lynch syndrome (HNPCC): recommendations by a group of European experts JO - Gut VL - 62 UR - https://doi.org/10.1136/gutjnl-2012-304356 DO - 10.1136/gutjnl-2012-304356 ID - Vasen2013 ER - TY - STD TI - Nielsen M, Lynch H, Infante E, Brand R. MUTYH-associated polyposis. In: Adam MP, Ardinger HH, Pagon RA, Wallace SE, Bean LJH, Mefford HC, Stephens K, Amemiya A, Ledbetter N, editors. GeneReviews. Seattle: University of Washington; 1993–2017. ID - ref57 ER - TY - JOUR AU - Vogelstein, B. AU - Fearon, E. R. AU - Hamilton, S. R. AU - Kern, S. E. AU - Preisinger, A. C. AU - Leppert, M. PY - 1988 DA - 1988// TI - Genetic alterations during colorectal tumor development JO - N Engl J Med VL - 319 UR - https://doi.org/10.1056/NEJM198809013190901 DO - 10.1056/NEJM198809013190901 ID - Vogelstein1988 ER - TY - JOUR AU - Worthley, D. L. AU - Leggett, B. A. PY - 2010 DA - 2010// TI - Colorectal cancer: molecular features and clinical opportunities JO - Clin Biochem Rev VL - 31 ID - Worthley2010 ER - TY - JOUR AU - Watanabe, T. AU - Kobunai, T. AU - Yamamoto, Y. AU - Matsuda, K. AU - Ishihara, S. AU - Nozawa, K. PY - 2012 DA - 2012// TI - Chromosomal instability (CIN) phenotype, CIN high or CIN low, predicts survival for colorectal cancer JO - J Clin Oncol VL - 30 UR - https://doi.org/10.1200/JCO.2011.38.6490 DO - 10.1200/JCO.2011.38.6490 ID - Watanabe2012 ER - TY - JOUR AU - Boland, C. R. AU - Goel, A. PY - 2010 DA - 2010// TI - Microsatellite instability in colorectal cancer JO - Gastroenterology VL - 138 UR - https://doi.org/10.1053/j.gastro.2009.12.064 DO - 10.1053/j.gastro.2009.12.064 ID - Boland2010 ER - TY - JOUR AU - Hinoue, T. AU - Weisenberger, D. J. AU - Lange, C. P. AU - Shen, H. AU - Byun, H. M. AU - Berg, D. PY - 2012 DA - 2012// TI - Genome-scale analysis of aberrant DNA methylation in colorectal cancer JO - Genome Res VL - 22 UR - https://doi.org/10.1101/gr.117523.110 DO - 10.1101/gr.117523.110 ID - Hinoue2012 ER - TY - JOUR AU - Chan, A. O. AU - Broaddus, R. R. AU - Houlihan, P. S. AU - Issa, J. P. AU - Hamilton, S. R. AU - Rashid, A. PY - 2002 DA - 2002// TI - CpG island methylation in aberrant crypt foci of the colorectum JO - Am J Pathol VL - 160 UR - https://doi.org/10.1016/S0002-9440(10)61128-5 DO - 10.1016/S0002-9440(10)61128-5 ID - Chan2002 ER - TY - JOUR AU - Vilar, E. AU - Gruber, S. B. PY - 2010 DA - 2010// TI - Microsatellite instability in colorectal cancer-the stable evidence JO - Nat Rev Clin Oncol VL - 7 UR - https://doi.org/10.1038/nrclinonc.2009.237 DO - 10.1038/nrclinonc.2009.237 ID - Vilar2010 ER - TY - JOUR AU - Winter, S. E. AU - Lopez, C. A. AU - Baumler, A. J. PY - 2013 DA - 2013// TI - The dynamics of gut associated microbial communities during inflammation JO - EMBO Rep VL - 14 UR - https://doi.org/10.1038/embor.2013.27 DO - 10.1038/embor.2013.27 ID - Winter2013 ER - TY - JOUR AU - Jobin, C. PY - 2012 DA - 2012// TI - Colorectal cancer: CRC—all about microbial products and barrier function? JO - Nat Rev Gastroenterol Hepatol VL - 9 UR - https://doi.org/10.1038/nrgastro.2012.220 DO - 10.1038/nrgastro.2012.220 ID - Jobin2012 ER - TY - JOUR AU - Arthur, J. C. AU - Perez-Chanona, E. AU - Muhlbauer, M. AU - Tomkovich, S. AU - Uronis, J. M. AU - Fan, T. J. PY - 2012 DA - 2012// TI - Intestinal inflammation targets cancer-inducing activity of the microbiota JO - Science VL - 338 UR - https://doi.org/10.1126/science.1224820 DO - 10.1126/science.1224820 ID - Arthur2012 ER - TY - JOUR AU - Gagnière, J. AU - Raisch, J. AU - Veziant, J. AU - Barnich, N. AU - Bonnet, R. AU - Buc, E. PY - 2016 DA - 2016// TI - Gut microbiota imbalance and colorectal cancer JO - World J Gastroenterol VL - 22 UR - https://doi.org/10.3748/wjg.v22.i2.501 DO - 10.3748/wjg.v22.i2.501 ID - Gagnière2016 ER - TY - JOUR AU - Gao, R. AU - Gao, Z. AU - Huang, L. AU - Qin, H. PY - 2017 DA - 2017// TI - Gut microbiota and colorectal cancer JO - Eur J Clin Microbiol Infect Dis VL - 36 UR - https://doi.org/10.1007/s10096-016-2881-8 DO - 10.1007/s10096-016-2881-8 ID - Gao2017 ER - TY - JOUR AU - Cutsem, E. AU - Cervantes, A. AU - Adam, R. AU - Sobrero, A. AU - Krieken, J. H. AU - Aderka, D. PY - 2016 DA - 2016// TI - ESMO consensus guidelines for the management of patients with metastatic colorectal cancer JO - Ann Oncol VL - 27 UR - https://doi.org/10.1093/annonc/mdw235 DO - 10.1093/annonc/mdw235 ID - Cutsem2016 ER - TY - JOUR AU - Bruera, G. AU - Cannita, K. AU - Tessitore, A. AU - Russo, A. AU - Alesse, E. AU - Ficorella, C. PY - 2015 DA - 2015// TI - The prevalent KRAS exon 2 c.35 G > A mutation in metastatic colorectal cancer patients: a biomarker of worse prognosis and potential benefit of bevacizumab-containing intensive regimens? JO - Crit Rev Oncol Hematol VL - 93 UR - https://doi.org/10.1016/j.critrevonc.2014.10.004 DO - 10.1016/j.critrevonc.2014.10.004 ID - Bruera2015 ER - TY - JOUR AU - Cutsem, E. AU - Köhne, C. H. AU - Làng, I. AU - Folprecht, G. AU - Nowacki, M. P. AU - Cascinu, S. PY - 2011 DA - 2011// TI - Cetuximab plus irinotecan, fluorouracil, and leucovorin as first-line treatment for metastatic colorectal cancer: updated analysis of overall survival according to tumor KRAS and BRAF mutation status JO - J Clin Oncol VL - 29 UR - https://doi.org/10.1200/JCO.2010.33.5091 DO - 10.1200/JCO.2010.33.5091 ID - Cutsem2011 ER - TY - JOUR AU - Bokemeyer, C. AU - Bondarenko, I. AU - Hartmann, J. T. AU - Braud, F. AU - Schuch, G. AU - Zubel, A. PY - 2011 DA - 2011// TI - Efficacy according to biomarker status of cetuximab plus FOLFOX-4 as first-line treatment for metastatic colorectal cancer: the OPUS study JO - Ann Oncol VL - 22 UR - https://doi.org/10.1093/annonc/mdq632 DO - 10.1093/annonc/mdq632 ID - Bokemeyer2011 ER - TY - JOUR AU - Grada, A. AU - Weinbrecht, K. PY - 2013 DA - 2013// TI - Next-generation sequencing: methodology and application JO - J Invest Dermatol VL - 133 UR - https://doi.org/10.1038/jid.2013.248 DO - 10.1038/jid.2013.248 ID - Grada2013 ER - TY - JOUR AU - Peeters, M. AU - Oliner, K. S. AU - Parker, A. AU - Siena, S. AU - Cutsem, E. AU - Huang, J. PY - 2013 DA - 2013// TI - Massively parallel tumor multigene sequencing to evaluate response to panitumumab in a randomized phase III study of metastatic colorectal cancer JO - Clin Cancer Res VL - 19 UR - https://doi.org/10.1158/1078-0432.CCR-12-1913 DO - 10.1158/1078-0432.CCR-12-1913 ID - Peeters2013 ER - TY - JOUR AU - Kothari, N. AU - Schell, M. J. AU - Teer, J. K. AU - Yeatman, T. AU - Shibata, D. AU - Kim, R. PY - 2014 DA - 2014// TI - Comparison of KRAS mutation analysis of colorectal cancer samples by standard testing and next-generation sequencing JO - J Clin Pathol VL - 67 UR - https://doi.org/10.1136/jclinpath-2014-202405 DO - 10.1136/jclinpath-2014-202405 ID - Kothari2014 ER - TY - JOUR AU - Ciardiello, F. AU - Normanno, N. AU - Maiello, E. AU - Martinelli, E. AU - Troiani, T. AU - Pisconti, S. PY - 2014 DA - 2014// TI - Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next-generation sequencing: findings from the CAPRI-GOIM trial JO - Ann Oncol VL - 25 UR - https://doi.org/10.1093/annonc/mdu230 DO - 10.1093/annonc/mdu230 ID - Ciardiello2014 ER - TY - JOUR AU - Bai, J. AU - Gao, J. AU - Mao, Z. AU - Wang, J. AU - Li, J. AU - Li, W. PY - 2015 DA - 2015// TI - Genetic mutations in human rectal cancers detected by targeted sequencing JO - J Hum Genet VL - 60 UR - https://doi.org/10.1038/jhg.2015.71 DO - 10.1038/jhg.2015.71 ID - Bai2015 ER - TY - JOUR AU - Harlé, A. AU - Filhine-Tresarrieu, P. AU - Husson, M. AU - Boidot, R. AU - Rouyer, M. AU - Dubois, C. AU - Leroux, A. AU - Merlin, J. L. PY - 2016 DA - 2016// TI - Rare RAS mutations in metastatic colorectal cancer detected during routine RAS genotyping using next generation sequencing JO - Target Oncol. VL - 11 UR - https://doi.org/10.1007/s11523-015-0404-7 DO - 10.1007/s11523-015-0404-7 ID - Harlé2016 ER - TY - JOUR AU - Taieb, J. AU - Balogoun, R. AU - Malicot, K. AU - Tabernero, J. AU - Mini, E. AU - Folprecht, G. PY - 2017 DA - 2017// TI - Adjuvant FOLFOX ± cetuximab in full RAS and BRAF wildtype stage III colon cancer patients JO - Ann Oncol VL - 28 ID - Taieb2017 ER - TY - JOUR AU - Ashktorab, H. AU - Mokarram, P. AU - Azimi, H. AU - Olumi, H. AU - Varma, S. AU - Nickerson, M. L. PY - 2017 DA - 2017// TI - Targeted exome sequencing reveals distinct pathogenic variants in Iranians with colorectal cancer JO - Oncotarget VL - 8 ID - Ashktorab2017 ER - TY - JOUR AU - Gong, J. AU - Cho, M. AU - Sy, M. AU - Salgia, R. AU - Fakih, M. PY - 2017 DA - 2017// TI - Molecular profiling of metastatic colorectal tumors using next-generation sequencing: a single-institution experience JO - Oncotarget VL - 8 ID - Gong2017 ER - TY - JOUR AU - Geißler, A. L. AU - Geißler, M. AU - Kottmann, D. AU - Lutz, L. AU - Fichter, C. D. AU - Fritsch, R. AU - Weddeling, B. AU - Makowiec, F. AU - Werner, M. AU - Lassmann, S. PY - 2017 DA - 2017// TI - ATM mutations and E-cadherin expression define sensitivity to EGFR-targeted therapy in colorectal cancer JO - Oncotarget VL - 8 ID - Geißler2017 ER - TY - JOUR AU - Lee, S. J. AU - Li, G. G. AU - Kim, S. T. AU - Hong, M. E. AU - Jang, J. AU - Yoon, N. PY - 2015 DA - 2015// TI - NTRK1 rearrangement in colorectal cancer patients: evidence for actionable target using patient-derived tumor cell line JO - Oncotarget VL - 6 UR - https://doi.org/10.18632/oncotarget.5494 DO - 10.18632/oncotarget.5494 ID - Lee2015 ER - TY - JOUR AU - Adua, D. AU - Fabio, F. AU - Ercolani, G. AU - Fiorentino, M. AU - Gruppioni, E. AU - Altimari, A. PY - 2017 DA - 2017// TI - Heterogeneity in the colorectal primary tumor and the synchronous resected liver metastases prior to and after treatment with an anti-EGFR monoclonal antibody JO - Mol Clin Oncol VL - 7 UR - https://doi.org/10.3892/mco.2017.1270 DO - 10.3892/mco.2017.1270 ID - Adua2017 ER - TY - JOUR AU - Hsu, H. C. AU - Thiam, T. K. AU - Lu, Y. J. AU - Yeh, C. Y. AU - Tsai, W. S. AU - You, J. F. PY - 2016 DA - 2016// TI - Mutations of KRAS/NRAS/BRAF predict cetuximab resistance in metastatic colorectal cancer patients JO - Oncotarget VL - 7 UR - https://doi.org/10.18632/oncotarget.8076 DO - 10.18632/oncotarget.8076 ID - Hsu2016 ER - TY - JOUR AU - Ma, W. AU - Brodie, S. AU - Agersborg, S. AU - Funari, V. A. AU - Albitar, M. PY - 2017 DA - 2017// TI - Significant improvement in detecting BRAF, KRAS, and EGFR mutations using next-generation sequencing as compared with FDA-cleared kits JO - Mol Diagn Ther ID - Ma2017 ER - TY - JOUR AU - Sjöblom, T. AU - Jones, S. AU - Wood, L. D. AU - Parsons, D. W. AU - Lin, J. AU - Barber, T. D. PY - 2006 DA - 2006// TI - The consensus coding sequences of human breast and colorectal cancers JO - Science VL - 314 UR - https://doi.org/10.1126/science.1133427 DO - 10.1126/science.1133427 ID - Sjöblom2006 ER - TY - JOUR AU - Wood, L. D. AU - Parsons, D. W. AU - Jones, S. AU - Lin, J. AU - Sjöblom, T. AU - Leary, R. J. PY - 2007 DA - 2007// TI - The genomic landscapes of human breast and colorectal cancers JO - Science VL - 318 UR - https://doi.org/10.1126/science.1145720 DO - 10.1126/science.1145720 ID - Wood2007 ER - TY - JOUR AU - Han, S. W. AU - Kim, H. P. AU - Shin, J. Y. AU - Jeong, E. G. AU - Lee, W. C. AU - Lee, K. H. PY - 2013 DA - 2013// TI - Targeted sequencing of cancer-related genes in colorectal cancer using next-generation sequencing JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0064271 DO - 10.1371/journal.pone.0064271 ID - Han2013 ER - TY - JOUR AU - Shanmugam, V. AU - Ramanathan, R. K. AU - Lavender, N. A. AU - Sinari, S. AU - Chadha, M. AU - Liang, W. S. PY - 2014 DA - 2014// TI - Whole genome sequencing reveals potential targets for therapy in patients with refractory KRAS mutated metastatic colorectal cancer JO - BMC Med Genom VL - 7 UR - https://doi.org/10.1186/1755-8794-7-36 DO - 10.1186/1755-8794-7-36 ID - Shanmugam2014 ER - TY - JOUR AU - Malapelle, U. AU - Pisapia, P. AU - Sgariglia, R. AU - Vigliar, E. AU - Biglietto, M. AU - Carlomagno, C. PY - 2016 DA - 2016// TI - Less frequently mutated genes in colorectal cancer: evidences from next-generation sequencing of 653 routine cases JO - J Clin Pathol VL - 69 UR - https://doi.org/10.1136/jclinpath-2015-203403 DO - 10.1136/jclinpath-2015-203403 ID - Malapelle2016 ER - TY - JOUR AU - Talseth-Palmer, B. A. AU - Bauer, D. C. AU - Sjursen, W. AU - Evans, T. J. AU - McPhillips, M. AU - Proietto, A. PY - 2016 DA - 2016// TI - Targeted next-generation sequencing of 22 mismatch repair genes identifies Lynch syndrome families JO - Cancer Med VL - 5 UR - https://doi.org/10.1002/cam4.628 DO - 10.1002/cam4.628 ID - Talseth-Palmer2016 ER - TY - JOUR AU - Stadler, Z. K. AU - Battaglin, F. AU - Middha, S. AU - Hechtman, J. F. AU - Tran, C. AU - Cercek, A. PY - 2016 DA - 2016// TI - Reliable detection of mismatch repair deficiency in colorectal cancers using mutational load in next-generation sequencing panels JO - J Clin Oncol VL - 34 UR - https://doi.org/10.1200/JCO.2015.65.1067 DO - 10.1200/JCO.2015.65.1067 ID - Stadler2016 ER - TY - JOUR AU - Jones, J. C. AU - Renfro, L. A. AU - Al-Shamsi, H. O. AU - Schrock, A. B. AU - Rankin, A. AU - Zhang, B. Y. PY - 2017 DA - 2017// TI - Non-V600 BRAF mutations define a clinically distinct molecular subtype of metastatic colorectal cancer JO - J Clin Oncol ID - Jones2017 ER - TY - JOUR AU - Morris, A. R. AU - Bos, A. AU - Diosdado, B. AU - Rooijers, K. AU - Elkon, R. AU - Bolijn, A. S. PY - 2012 DA - 2012// TI - Alternative cleavage and polyadenylation during colorectal cancer development JO - Clin Cancer Res VL - 18 UR - https://doi.org/10.1158/1078-0432.CCR-12-0543 DO - 10.1158/1078-0432.CCR-12-0543 ID - Morris2012 ER - TY - JOUR AU - Bánky, B. AU - Rásó-Barnett, L. AU - Barbai, T. AU - Tímár, J. AU - Becságh, P. AU - Rásó, E. PY - 2012 DA - 2012// TI - Characteristics of CD44 alternative splice pattern in the course of human colorectal adenocarcinoma progression JO - Mol Cancer VL - 11 UR - https://doi.org/10.1186/1476-4598-11-83 DO - 10.1186/1476-4598-11-83 ID - Bánky2012 ER - TY - JOUR AU - Wu, Y. AU - Wang, X. AU - Wu, F. AU - Huang, R. AU - Xue, F. AU - Liang, G. PY - 2012 DA - 2012// TI - Transcriptome profiling of the cancer, adjacent non-tumor and distant normal tissues from a colorectal cancer patient by deep sequencing JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0041001 DO - 10.1371/journal.pone.0041001 ID - Wu2012 ER - TY - JOUR AU - Seshagiri, S. AU - Stawiski, E. W. AU - Durinck, S. AU - Modrusan, Z. AU - Storm, E. E. AU - Conboy, C. B. PY - 2012 DA - 2012// TI - Recurrent R-spondin fusions in colon cancer JO - Nature VL - 488 UR - https://doi.org/10.1038/nature11282 DO - 10.1038/nature11282 ID - Seshagiri2012 ER - TY - JOUR AU - Li, X. X. AU - Zheng, H. T. AU - Peng, J. J. AU - Huang, L. Y. AU - Shi, D. B. AU - Liang, L. PY - 2014 DA - 2014// TI - RNA-seq reveals determinants for irinotecan sensitivity/resistance in colorectal cancer cell lines JO - Int J Clin Exp Pathol VL - 7 ID - Li2014 ER - TY - JOUR AU - Li, X. X. AU - Peng, J. J. AU - Liang, L. AU - Huang, L. Y. AU - Li, D. W. PY - 2014 DA - 2014// TI - RNA-seq identifies determinants of oxaliplatin sensitivity in colorectal cancer cell lines JO - Int J Clin Exp Pathol VL - 7 ID - Li2014 ER - TY - JOUR AU - Slattery, M. L. AU - Herrick, J. S. AU - Mullany, L. E. AU - Gertz, J. AU - Wolff, R. K. PY - 2015 DA - 2015// TI - Improved survival among colon cancer patients with increased differentially expressed pathways JO - BMC Med VL - 13 UR - https://doi.org/10.1186/s12916-015-0292-9 DO - 10.1186/s12916-015-0292-9 ID - Slattery2015 ER - TY - JOUR AU - Chen, J. AU - Zhou, Q. AU - Wang, Y. AU - Ning, K. PY - 2016 DA - 2016// TI - Single-cell SNP analyses and interpretations based on RNA-Seq data for colon cancer research JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep34420 DO - 10.1038/srep34420 ID - Chen2016 ER - TY - JOUR AU - Lee, J. R. AU - Kwon, C. H. AU - Choi, Y. AU - Park, H. J. AU - Kim, H. S. AU - Jo, H. J. PY - 2016 DA - 2016// TI - Transcriptome analysis of paired primary colorectal carcinoma and liver metastases reveals fusion transcripts and similar gene expression profiles in primary carcinoma and liver metastases JO - BMC Cancer VL - 16 UR - https://doi.org/10.1186/s12885-016-2596-3 DO - 10.1186/s12885-016-2596-3 ID - Lee2016 ER - TY - JOUR AU - Slattery, M. L. AU - Herrick, J. S. AU - Mullany, L. E. AU - Samowitz, W. S. AU - Sevens, J. R. AU - Sakoda, L. PY - 2017 DA - 2017// TI - The co-regulatory networks of tumor suppressor genes, oncogenes, and miRNAs in colorectal cancer JO - Genes Chromosom Cancer ID - Slattery2017 ER - TY - JOUR AU - Snezhkina, A. V. AU - Krasnov, G. S. AU - Zaretsky, A. R. AU - Zhavoronkov, A. AU - Nyushko, K. M. AU - Moskalev, A. A. PY - 2016 DA - 2016// TI - Differential expression of alternatively spliced transcripts related to energy metabolism in colorectal cancer JO - BMC Genom VL - 17 UR - https://doi.org/10.1186/s12864-016-3351-5 DO - 10.1186/s12864-016-3351-5 ID - Snezhkina2016 ER - TY - JOUR AU - Ashktorab, H. AU - Rahi, H. AU - Wansley, D. AU - Varma, S. AU - Shokrani, B. AU - Lee, E. PY - 2013 DA - 2013// TI - Toward a comprehensive and systematic methylome signature in colorectal cancers JO - Epigenetics VL - 8 UR - https://doi.org/10.4161/epi.25497 DO - 10.4161/epi.25497 ID - Ashktorab2013 ER - TY - JOUR AU - Hansen, K. D. AU - Timp, W. AU - Bravo, H. C. AU - Sabunciyan, S. AU - Langmead, B. AU - McDonald, O. G. PY - 2011 DA - 2011// TI - Increased methylation variation in epigenetic domains across cancer types JO - Nat Genet VL - 43 UR - https://doi.org/10.1038/ng.865 DO - 10.1038/ng.865 ID - Hansen2011 ER - TY - JOUR AU - Berman, B. P. AU - Weisenberger, D. J. AU - Aman, J. F. AU - Hinoue, T. AU - Ramjan, Z. AU - Liu, Y. PY - 2012 DA - 2012// TI - Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains JO - Nat Genet VL - 44 UR - https://doi.org/10.1038/ng.969 DO - 10.1038/ng.969 ID - Berman2012 ER - TY - JOUR AU - Bartel, D. P. PY - 2009 DA - 2009// TI - MicroRNAs: target recognition and regulatory functions JO - Cell VL - 136 UR - https://doi.org/10.1016/j.cell.2009.01.002 DO - 10.1016/j.cell.2009.01.002 ID - Bartel2009 ER - TY - JOUR AU - Tessitore, A. AU - Cicciarelli, G. AU - Mastroiaco, V. AU - Vecchio, F. D. AU - Capece, D. AU - Verzella, D. PY - 2016 DA - 2016// TI - Therapeutic use of MicroRNAs in cancer JO - Anticancer Agents Med Chem VL - 16 UR - https://doi.org/10.2174/1871520615666150824153358 DO - 10.2174/1871520615666150824153358 ID - Tessitore2016 ER - TY - JOUR AU - Hamfjord, J. AU - Stangeland, A. M. AU - Hughes, T. AU - Skrede, M. L. AU - Tveit, K. M. AU - Ikdahl, T. PY - 2012 DA - 2012// TI - Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0034150 DO - 10.1371/journal.pone.0034150 ID - Hamfjord2012 ER - TY - JOUR AU - Röhr, C. AU - Kerick, M. AU - Fischer, A. AU - Kühn, A. AU - Kashofer, K. AU - Timmermann, B. PY - 2013 DA - 2013// TI - High-throughput miRNA and mRNA sequencing of paired colorectal normal, tumor and metastasis tissues and bioinformatic modeling of miRNA-1 therapeutic applications JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0067461 DO - 10.1371/journal.pone.0067461 ID - Röhr2013 ER - TY - JOUR AU - Koduru, S. V. AU - Tiwari, A. K. AU - Hazard, S. W. AU - Mahajan, M. AU - Ravnic, D. J. PY - 2017 DA - 2017// TI - Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer JO - J Genom VL - 5 UR - https://doi.org/10.7150/jgen.18856 DO - 10.7150/jgen.18856 ID - Koduru2017 ER - TY - JOUR AU - Neerincx, M. AU - Sie, D. L. AU - Wiel, M. A. AU - Grieken, N. C. AU - Burggraaf, J. D. AU - Dekker, H. PY - 2015 DA - 2015// TI - MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing JO - Oncogenesis VL - 5 UR - https://doi.org/10.1038/oncsis.2015.29 DO - 10.1038/oncsis.2015.29 ID - Neerincx2015 ER - TY - JOUR AU - Heitzer, E. AU - Auer, M. AU - Gasch, C. AU - Pichler, M. AU - Ulz, P. AU - Hoffmann, E. M. PY - 2013 DA - 2013// TI - Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing JO - Cancer Res VL - 73 UR - https://doi.org/10.1158/0008-5472.CAN-12-4140 DO - 10.1158/0008-5472.CAN-12-4140 ID - Heitzer2013 ER - TY - JOUR AU - Malapelle, U. AU - Mayo-de-Las-Casas, C. AU - Rocco, D. AU - Garzon, M. AU - Pisapia, P. AU - Jordana-Ariza, N. PY - 2017 DA - 2017// TI - Development of a gene panel for next-generation sequencing of clinically relevant mutations in cell-free DNA from cancer patients JO - Br J Cancer ID - Malapelle2017 ER - TY - JOUR AU - Rachiglio, A. M. AU - Esposito Abate, R. AU - Sacco, A. AU - Pasquale, R. AU - Fenizia, F. AU - Lambiase, M. PY - 2016 DA - 2016// TI - Limits and potential of targeted sequencing analysis of liquid biopsy in patients with lung and coloncarcinoma JO - Oncotarget VL - 7 UR - https://doi.org/10.18632/oncotarget.10704 DO - 10.18632/oncotarget.10704 ID - Rachiglio2016 ER - TY - JOUR AU - Beije, N. AU - Helmijr, J. C. AU - Weerts, M. J. AU - Beaufort, C. M. AU - Wiggin, M. AU - Marziali, A. PY - 2016 DA - 2016// TI - Somatic mutation detection using various targeted detection assays in paired samples of circulating tumor DNA, primary tumor and metastases from patients undergoing resection of colorectal liver metastases JO - Mol Oncol VL - S1574–7891 ID - Beije2016 ER - TY - JOUR AU - Ahn, J. AU - Sinha, R. AU - Pei, Z. AU - Dominianni, C. AU - Wu, J. AU - Shi, J. PY - 2013 DA - 2013// TI - Human gut microbiome and risk for colorectal cancer JO - J Natl Cancer Inst VL - 105 UR - https://doi.org/10.1093/jnci/djt300 DO - 10.1093/jnci/djt300 ID - Ahn2013 ER - TY - JOUR AU - Sinha, R. AU - Ahn, J. AU - Sampson, J. N. AU - Shi, J. AU - Yu, G. AU - Xiong, X. PY - 2016 DA - 2016// TI - Fecal microbiota, fecal metabolome, and colorectal cancer interrelations JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0152126 DO - 10.1371/journal.pone.0152126 ID - Sinha2016 ER - TY - STD TI - http://www.genome.gov/sequencingcost. Accessed Sept 2017 UR - http://www.genome.gov/sequencingcost ID - ref122 ER - TY - JOUR AU - Goswami, R. S. AU - Luthra, R. AU - Singh, R. R. AU - Patel, K. P. AU - Routbort, M. J. AU - Aldape, K. D. PY - 2016 DA - 2016// TI - Identification of factors affecting the success of next-generation sequencing testing in solid tumors JO - Am J Clin Pathol VL - 145 UR - https://doi.org/10.1093/ajcp/aqv023 DO - 10.1093/ajcp/aqv023 ID - Goswami2016 ER - TY - JOUR AU - Kamalakaran, S. AU - Varadan, V. AU - Janevski, A. AU - Banerjee, N. AU - Tuck, D. AU - McCombie, W. R. PY - 2013 DA - 2013// TI - Translating next generation sequencing to practice: opportunities and necessary steps JO - Mol Oncol VL - 7 UR - https://doi.org/10.1016/j.molonc.2013.04.008 DO - 10.1016/j.molonc.2013.04.008 ID - Kamalakaran2013 ER - TY - JOUR AU - Endrullat, C. AU - Glökler, J. AU - Franke, P. AU - Frohme, M. PY - 2016 DA - 2016// TI - Standardization and quality management in next-generation sequencing JO - Appl Transl Genom VL - 10 UR - https://doi.org/10.1016/j.atg.2016.06.001 DO - 10.1016/j.atg.2016.06.001 ID - Endrullat2016 ER - TY - JOUR AU - Matthijs, G. AU - Souche, E. AU - Alders, M. AU - Corveleyn, A. AU - Eck, S. AU - Feenstra, I. PY - 2016 DA - 2016// TI - Guidelines for diagnostic next-generation sequencing JO - Eur J Hum Genet VL - 24 UR - https://doi.org/10.1038/ejhg.2016.63 DO - 10.1038/ejhg.2016.63 ID - Matthijs2016 ER - TY - JOUR AU - Ashktorab, H. AU - Azimi, H. AU - Nickerson, M. AU - Bass, S. AU - Varma, S. AU - Brim, H. PY - 2016 DA - 2016// TI - Targeted exome sequencing outcome variations of colorectal tumors within and across two sequencing platforms JO - Next Gener Seq Appl VL - 3 ID - Ashktorab2016 ER - TY - JOUR AU - Dong, L. AU - Wang, W. AU - Li, A. AU - Kansal, R. AU - Chen, Y. AU - Chen, H. PY - 2015 DA - 2015// TI - Clinical next generation sequencing for precision medicine in cancer JO - Curr Genom VL - 16 UR - https://doi.org/10.2174/1389202915666150511205313 DO - 10.2174/1389202915666150511205313 ID - Dong2015 ER -