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Table 1 Details of the three datasets used in the OneComp performance evaluation

From: Statistically controlled identification of differentially expressed genes in one-to-one cell line comparisons of the CMAP database for drug repositioning

Dataset

Platform

Phenotype

Sub-datasets

Sample no. (control vs treat)

GSE41326

HepG2

Liver

Sub 1

GSM1014792 vs GSM1014795

Sub 2

GSM1014793 vs GSM1014796

Sub 3

GSM1014794 vs GSM1014797

GSE7161

HCT116

Colon

Sub 1

GSM172453 vs GSM172451

Sub 2

GSM172454 vs GSM172452

Sub 3

GSM172457 vs GSM172455

Sub 4

GSM172458 vs GSM172456

GSE37820

MCF7

Breast

Sub 1

GSM928442 vs GSM928445

Sub 2

GSM928443 vs GSM928446

Sub 3

GSM928444 vs GSM928447