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Table 1 Primer sequences

From: Methylation pattern analysis in prostate cancer tissue: identification of biomarkers using an MS-MLPA approach

Gene

Outer primer sequences

Methylated primer sequences

Unmethylated primer sequences

GSTP1

 

5′-TATCGTGGTTTATTTTTTAGTTCGA-3′

3′-ATAAAAAAATTCGAATCTCTCCGA-5′

5′-TATTGTGGTTTATTTTTTAGTTTGA-3′

3′-ATAAAAAAATTCAAATCTCTCCAAA-5′

RARB

5′-TATGCGAGTTGTTTGAGGATTGGGA-3′

3′-AATAATCATTTACCATTTTCCAAACTTA-5′

5′-TGTGAGAACGCGAGCGATTC-3′

3′-CGACCAATCCAACCGAAACGA-5′

5′-TTGGGATGTTGAGAATGTGAGTGATTT-3′

3′-CTTACTCAACCAATCCAACCAAAACAA-5′

RASSF1

5′-GTTTAGTTTGGATTTTGGGGGAG-3′

3′-CCCACAACTCAATAAACTCAATAAACTCAAACTC-5′

5′-GGGTTCGTTTTGTGGTTTCGTTC-3′

3′-TAACCCGATTAAACCCGTACTTCG-5′

5′-GGGGTTTGTTTTGTGGTTTTGTTT-3′

3′-AACATAACCCAATTAAACCCATACTTCA-5′

SCGB3A1

5′-AGTGAGGATATTTAGAGAAATTTAGG-3′

3′-ATCCCTACCTCTAATCCCAA-5′

5′-GCGTCGAGGTTAGTTCG-3′

3′-GTAAACGCCTTCTACGCCTAA-5′

5′-GTGTTGAGGTTAGTTTTGAAGA-3′

3′-TAAACACCTTCTACACCTAAAA-5′

CCND2

5′-TATTTTTTGTAAAGATAGTTTTGATTTAAGG-3′

3′-TTTCCCCGAAAACATAAAACCTCC-5′

5′-GGCGGATTTTATCGTAGTCG-3′

3′-CTCCACGCTCGATCCTTCG-5′

5′-AGAGTATGTGTTAGGGTTGATT-3′

3′-ACATCCTCACCAACCTCCA-5′