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Table 1 Chromosomal coordinates and regions of RNA editing biomarkers used for sequencing validation and RESSq-PCR assay development

From: An RNA editing fingerprint of cancer stem cell reprogramming

Gene

Chr

Position

Region

Reference

MDM2

12

69237534

3′UTR

[1,31]

APOBEC3D

22

39415872

Intron (Alu)

[1,31]

GLI1

12

57864624

Exon

[32]

AZIN1

8

103841636

Exon

[1,5]

SRP9

1

225976198

Intron (Alu)

[1,31]

SF3B3

16

70610885

3'UTR (Alu)

[1,31]

ABI1

10

27049636

Intron (Alu)

[1,31]

LYST

1

235990569

Intron (Alu)

[1,31]

MDM4

1

204521159

3'UTR (Alu)

[1,31]

  1. Loci (hg19 chromosomal coordinates) in bold denote sites included in the RNA editing fingerprint assay for RESSq-PCR analysis.