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Table 1 Chromosomal coordinates and regions of RNA editing biomarkers used for sequencing validation and RESSq-PCR assay development

From: An RNA editing fingerprint of cancer stem cell reprogramming

Gene Chr Position Region Reference
MDM2 12 69237534 3′UTR [1,31]
APOBEC3D 22 39415872 Intron (Alu) [1,31]
GLI1 12 57864624 Exon [32]
AZIN1 8 103841636 Exon [1,5]
SRP9 1 225976198 Intron (Alu) [1,31]
SF3B3 16 70610885 3'UTR (Alu) [1,31]
ABI1 10 27049636 Intron (Alu) [1,31]
LYST 1 235990569 Intron (Alu) [1,31]
MDM4 1 204521159 3'UTR (Alu) [1,31]
  1. Loci (hg19 chromosomal coordinates) in bold denote sites included in the RNA editing fingerprint assay for RESSq-PCR analysis.