Table 1 Bioinformatic predictors of HIV-1 coreceptor use based on V3 loop sequence.
Predictor | URL | Method | Ref |
|---|---|---|---|
R5/X4 and NSI/SI network | Neural network | Resch et al, 2001 | |
WebPSSM | PSSM | Jensen et al, 2003 | |
WetCat | SVM | Pillai et al, 2003 | |
Geno2pheno | SVM | Sing et al, 2007 | |
V3SD | The source code for prediction and analysis is available upon request. | SVM | Sander et al, 2007 |
R5/X4-pred | Random forests | Xu et al, 2007 | |
ANN | Not available | Neural network | Lamers et al, 2008 |
hiv-dskernel | SVM | Boisvert et al, 2008 |