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Table 3 Gene expression comparison of normal epithelium versus tumor cells, and normal stroma versus tumor stroma

From: Increased matrix metalloproteinase activation in esophageal squamous cell carcinoma

Case Sample Detector Avg.Ct St. Dev ΔCtN Sample Av.Ct St. dev ΔCtT ΔΔCt 2^-ΔΔCt
1 NE MMP3 39.59   17.86 TE 25.50 0.108 5.37 -12.48
NE MMP10 38.59 3.43 16.85 TE 21.39 0.07 1.25 -15.59
NE ACTB 21.73 0.22   TE 20.13 0.03    
NS MMP3 36.20 0.75 15.77 TS 28.79 0.19 9.3 -6.47
NS MMP10 35.38 0.75 14.95 TS 22.35 0.07 2.85 -12.09
NS ACTB 20.43 0.06   TS 19.49 0.04    
2 NE MMP3 39.54   13.77 TE 39.87   12.29 -1.48
NE MMP10 38.68   12.92 TE 30.25 0.02 2.66 -10.25
NE ACTB 25.76 0.166   TE 27.58 0.22    
NS MMP3 39.97   15.03 TS 32.58 0.42 4.21 -10.82
NS MMP10 UD    TS 31.02 0.17 2.65 OFF-N, ON-T
NS ACTB 24.93 0.051   TS 28.36 0.159    
3 NE MMP3 UD    TE 38.51 1.49 14.13 OFF-N, ON-T
NE MMP10 UD    TE 31.93 0.257 7.55 OFF-N, ON-T
NE ACTB 23.45 0.058   TE 24.38 0.07    
NS MMP3 UD    TS 36.23 1.1 11.44 OFF-N, ON-T
NS MMP10 UD    TS 34.13 0.80 9.34 OFF-N, ON-T
NS ACTB 24.40 0.016   TS 24.79 0.07    
4 NE MMP3 UD    TE 31.89 0.174   OFF-N, ON-T
NE MMP10 39.42   15.99 TE 27.00 0.03 4.59 -11.40
NE ACTB 23.43 0.056   TE 22.41 0.033    
NS MMP3 38.95   15.91 TS 29.61 0.108 5.24 -10.66
NS MMP10 39.1   16.06 TS 27.69 0.118 3.32 -12.73
NS ACTB 23.03 0.095   TS 24.36 0.05    
5 NE MMP3 UD    TE 29.94 0.172   OFF-N, ON-T
NE MMP10 UD    TE 30.28 0.209   OFF-N, ON-T
NE ACTB 25.31 0.073   TE 25.08 0.048    
NS MMP3 39.65   16.22 TS 32.59 0.334 4.81 -11.40
NS MMP10 39.38   15.95 TS 33.01 0.451 5.23 -10.72
NS ACTB 23.43 0.0013   TS 27.78 0.0911    
  1. NE, normal epithelium; NS, normal stroma; TE, tumor epithelium; TS, tumor stroma.