Table 1 Selection Criteria of Genes Assayed by Ziplex Technology
Selection Criteria Categories | Affymetrix U133A Probe Set | GeneID* | Gene Name | Reference |
|---|---|---|---|---|
A: Differentially expressed genes based on Affymetrix U133A analysis | 208782_at | 11167 | FSTL1 | 25 |
213069_at | 57493 | HEG1 | 25 | |
218729_at | 56925 | LXN | 25 | |
202620_s_at | 5352 | PLOD2 | 25 | |
217811_at | 51714 | SELT | 25 | |
213338_at | 25907 | TMEM158 | 25 | |
203282_at | 2632 | GBE1 | 25 | |
204846_at | 1356 | CP | 25 | |
221884_at | 2122 | EVI1 | 25 | |
202310_s_at | 1277 | COL1A1 | 26 | |
201508_at | 3487 | IGFBP4 | 26 | |
200654_at | 5034 | P4HB | 26 | |
212372_at | 4628 | MYH10 | 26 | |
216598_s_at | 6347 | CCL2 | 26 | |
208626_s_at | 10493 | VAT1 | 26 | |
41220_at | 10801 | SEPT9 | 26 | |
208789_at | 284119 | PTRF | 26 | |
206295_at | 3606 | IL18 | 22 | |
202859_x_at | 3576 | IL8 | 22 | |
209969_s_at | 6772 | STAT1 | 22 | |
209846_s_at | 11118 | BTN3A2 | 22 | |
220327_at | 389136 | VGLL3 | 11 | |
203180_at | 220 | ALDH1A3 | 26 | |
204338_s_at | 5999 | RGS4 | 26 | |
204879_at | 10630 | PDPN | 26 | |
207510_at | 623 | BDKRB1 | 26 | |
208131_s_at | 5740 | PTGIS | 26 | |
211430_s_at | 3500 | IGHG1 | 26 | |
216834_at | 5996 | RGS1 | 26 | |
266_s_at | 100133941 | CD24 | 26 | |
213994_s_at | 10418 | SPON1 | 26 | |
221671_x_at | 3514 | IGKC | 26 | |
B: Genes exhibiting a range of expression values based on Affymetrix U133A analysis | 218304_s_at | 114885 | OSBPL11 | 25 |
219295_s_at | 26577 | PCOLCE2 | 25 | |
205329_s_at | 8723 | SNX4 | 25 | |
219036_at | 80321 | CEP70 | 25 | |
218926_at | 55892 | MYNN | 25 | |
208836_at | 483 | ATP1B3 | 25 | |
204992_s_at | 5217 | PFN2 | 25 | |
214143_x_at | 6152 | RPL24 | 25 | |
208691_at | 7037 | TFRC | 25 | |
203002_at | 51421 | AMOTL2 | 25 | |
221492_s_at | 64422 | ATG3 | 25 | |
218286_s_at | 9616 | RNF7 | 25 | |
212058_at | 23350 | SR140 | 25 | |
201519_at | 9868 | TOMM70A | 25 | |
209933_s_at | 11314 | CD300A | 26 | |
219184_x_at | 29928 | TIMM22 | 26 | |
204683_at | 3384 | ICAM2 | 26 | |
212529_at | 124801 | LSM12 | 26 | |
211899_s_at | 9618 | TRAF4 | 26 | |
218014_at | 79902 | NUP85 | 26 | |
200816_s_at | 5048 | PAFAH1B1 | 26 | |
202395_at | 4905 | NSF | 26 | |
201388_at | 5709 | PSMD3 | 26 | |
220975_s_at | 114897 | C1QTNF1 | 26 | |
210561_s_at | 26118 | WSB1 | 26 | |
202856_s_at | 9123 | SLC16A3 | 26 | |
212279_at | 27346 | TMEM97 | 26 | |
37408_at | 9902 | MRC2 | 26 | |
201140_s_at | 5878 | RAB5C | 26 | |
214218_s_at | 7503 | XIST | 24 | |
200600_at | 4478 | MSN | 24 | |
201136_at | 5355 | PLP2 | 24 | |
C: Genes exhibiting differential expression profiles based on older generation Affymetrix GeneChips (Hs 6000 (6), Hu 6800 (22)) | 202431_s_at | 4609 | MYC | 6 |
203752_s_at | 3727 | JUND | 6 | |
205009_at | 7031 | TFF1 | 6 | |
205067_at | 3553 | IL1B | 6 | |
200807_s_at | 3329 | HSPD1 | 6 | |
203139_at | 1612 | DAPK1 | 6 | |
200886_s_at | 5223 | PGAM1 | 6 | |
203083_at | 7058 | THBS2 | 6 | |
202284_s_at | 1026 | CDKN1A | 6 | |
212667_at | 6678 | SPARC | 6 | |
202627_s_at | 5054 | SERPINE1 | 6 | |
203382_s_at | 348 | APOE | 6 | |
211300_s_at | 7157 | TP53 | 6 | |
200953_s_at | 894 | CCND2 | 6 | |
201700_at | 896 | CCND3 | 6 | |
205881_at | 7625 | ZNF74 | 23 | |
207081_s_at | 5297 | PI4KA | 23 | |
205576_at | 3053 | SERPIND1 | 23 | |
203412_at | 8216 | LZTR1 | 23 | |
206184_at | 1399 | CRKL | 23 | |
D: Known oncogenes and tumour U133A analysis suppressor genes relevant to ovarian cancer biology | 203132_at | 5925 | RB1 | |
204531_s_at | 672 | BRCA1 | ||
214727_at | 675 | BRCA2 | ||
202520_s_at | 4292 | MLH1 | ||
216836_s_at | 2064 | ERBB2 | ||
204009_s_at | 3845 | KRAS | ||
206044_s_at | 673 | BRAF | ||
209421_at | 4436 | MSH2 | ||
211450_s_at | 2956 | MSH6 |