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Table 2 Nucleotide composition of available N-D-N regions of public Melan-A-specific clonotypes of melanoma patients

From: Identification of a public CDR3 motif and a biased utilization of T-cell receptor V beta and J beta chains in HLA-A2/Melan-A-specific T-cell clonotypes of melanoma patients

Clone ID

3' V region

N1

P

D region

N2

5' J region

TRBV

TRBJ

References

D/a

GCCAGCAGTTTA..

  

....CAGGGG..

CTGGGG

.......CAGCCCCAGCAT   

28

1–5

14

30

GCCTGGAGTGT   

  

...ACAGGGG..

CTGGGG

.....TATGGCTACACC     

30

1–2

in preparation

50B,55

GCCAGCAGCTT...

CACTGGGCT

 

......GGGG..

 

.......CAGCCCCAGCAT   

7

1–5

14

17

GCCAGCA.......

 TCTGGG  

 

....CAGGG...

CTCGGG

.......CAGCCCCAGCAT   

28

1–5

in preparation

814S1

XXXXXXA....   a

  CGAAT  

 

....CAGGGG..

CTCGGG

.......CAGCCCCAGXXX   

30

1–5

12

82899S32

XXXXXX.....   

GGGCAAAT 

 

.......GGGGC

TCGGG 

.......CAGCCCCAGXXX   

30

1–5

12

A/5

AGTGCTAG...   

 TGTGCC  

 

.......GGGGC

TCGGG 

.......CAGCCCCAGCAT   

20

1–5

14

25

GCCAGCAG......

   ACA   

 

...ACAGGGG..

TTGGG 

.........TTCACCCCTCCAC

28

1–6

in preparation

814S2

XXXXXXAG...   

 CCCGGT  

 

.....AGGG...

TTGGG 

......TCAGCCCCAGXXX   

30

1–5

12

82899S26

XXXXXXAGT..   

   CC    

 

....CAGGGGGC

TCGG  

......TCAGCCCCAGXXX   

30

1–5

12

42

GCCAGCAGT.....

   GT    

 

...ACAGGGG..

CTCGG 

......TCAGCCCCAGCAT   

28

1–5

in preparation

D/b

GCCAGTAGTAT...

  

..GACAGGG...

CTAGGG

.......CAGCCCCAGCAT   

19

1–5

14

6

AGTGC.......  

 GCCCGAT 

 

...ACAGGG...

CTTGGC

.......CAGCCCCAGCAT   

20

1–5

in preparation

4

GCCAGCAG......

 ATACCA  

 

GGGAC.......

TAGGA 

.......CAGCCCCAGCAT   

28

1–5

in preparation

39

GCCTGGAGTGT   

   CC    

 

....CAGGG...

CTAGG 

......TCAGCCCCAGCAT   

30

1–5

in preparation

NA

XXXXXXAGT..   

   CAT   

 

....CAGGG...

ATTGGG

....CTATGGCTACXXX     

30

1–2

12

16

GCCAGCA.......

  CCCT   

 

..GACAGGG...

CTTGGA

.......CAGCCCCAGCAT   

28

1–5

in preparation

6E4

GCCAGCAGTTT...

   TCT   

C

GGG.........

TTGGG 

....CACTGAAGCTTTC     

28

1-1

18

40

GCCAGCAGTTTA..

  

....CAGGG...

TTGGGG

.....ACTGAAGCTTTC     

28

1-1

in preparation

B/22

GCCAGCAGT.....

   CA    

 

...ACAGGG...

TTTGGG

......TCAGCCCCAGCAT   

28

1–5

14

41

GCCAGCAG......

   CCA   

 

...ACAGGGG..

CTCGG 

....CACTGAAGCTTTC     

28

1-1

in preparation

B/9

GCCAGCAGTTT...

   TCA   

 

GGGAC.......

TCGG  

......TCAGCCCCAGCAT   

28

1–5

14

  1. aNucleotides not available