Skip to main content

Table 2 Nucleotide composition of available N-D-N regions of public Melan-A-specific clonotypes of melanoma patients

From: Identification of a public CDR3 motif and a biased utilization of T-cell receptor V beta and J beta chains in HLA-A2/Melan-A-specific T-cell clonotypes of melanoma patients

Clone ID 3' V region N1 P D region N2 5' J region TRBV TRBJ References
D/a GCCAGCAGTTTA..    ....CAGGGG.. CTGGGG .......CAGCCCCAGCAT    28 1–5 14
30 GCCTGGAGTGT       ...ACAGGGG.. CTGGGG .....TATGGCTACACC      30 1–2 in preparation
50B,55 GCCAGCAGCTT... CACTGGGCT   ......GGGG..   .......CAGCCCCAGCAT    7 1–5 14
17 GCCAGCA.......  TCTGGG     ....CAGGG... CTCGGG .......CAGCCCCAGCAT    28 1–5 in preparation
814S1 XXXXXXA....   a   CGAAT     ....CAGGGG.. CTCGGG .......CAGCCCCAGXXX    30 1–5 12
82899S32 XXXXXX.....    GGGCAAAT    .......GGGGC TCGGG  .......CAGCCCCAGXXX    30 1–5 12
A/5 AGTGCTAG...     TGTGCC     .......GGGGC TCGGG  .......CAGCCCCAGCAT    20 1–5 14
25 GCCAGCAG......    ACA      ...ACAGGGG.. TTGGG  .........TTCACCCCTCCAC 28 1–6 in preparation
814S2 XXXXXXAG...     CCCGGT     .....AGGG... TTGGG  ......TCAGCCCCAGXXX    30 1–5 12
82899S26 XXXXXXAGT..       CC       ....CAGGGGGC TCGG   ......TCAGCCCCAGXXX    30 1–5 12
42 GCCAGCAGT.....    GT       ...ACAGGGG.. CTCGG  ......TCAGCCCCAGCAT    28 1–5 in preparation
D/b GCCAGTAGTAT...    ..GACAGGG... CTAGGG .......CAGCCCCAGCAT    19 1–5 14
6 AGTGC.......    GCCCGAT    ...ACAGGG... CTTGGC .......CAGCCCCAGCAT    20 1–5 in preparation
4 GCCAGCAG......  ATACCA     GGGAC....... TAGGA  .......CAGCCCCAGCAT    28 1–5 in preparation
39 GCCTGGAGTGT       CC       ....CAGGG... CTAGG  ......TCAGCCCCAGCAT    30 1–5 in preparation
NA XXXXXXAGT..       CAT      ....CAGGG... ATTGGG ....CTATGGCTACXXX      30 1–2 12
16 GCCAGCA.......   CCCT      ..GACAGGG... CTTGGA .......CAGCCCCAGCAT    28 1–5 in preparation
6E4 GCCAGCAGTTT...    TCT    C GGG......... TTGGG  ....CACTGAAGCTTTC      28 1-1 18
40 GCCAGCAGTTTA..    ....CAGGG... TTGGGG .....ACTGAAGCTTTC      28 1-1 in preparation
B/22 GCCAGCAGT.....    CA       ...ACAGGG... TTTGGG ......TCAGCCCCAGCAT    28 1–5 14
41 GCCAGCAG......    CCA      ...ACAGGGG.. CTCGG  ....CACTGAAGCTTTC      28 1-1 in preparation
B/9 GCCAGCAGTTT...    TCA      GGGAC....... TCGG   ......TCAGCCCCAGCAT    28 1–5 14
  1. aNucleotides not available