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Table 5 Haplotype analysis

From: Haplotype of gene Nedd4 binding protein 2 associated with sporadic nasopharyngeal carcinoma in the Southern Chinese population

Block

Haplotype

Frequenciesa

Case, Control Ratiosb

Chi Square

P Value

1(SNP1-4)

     
 

CAG

0.55

519.0:411.0, 420.2:357.8

0.557

0.4556

 

CGG

0.272

261.2:668.8, 204.2:573.8

0.724

0.3947

 

CAA

0.119

100.6:829.4, 103.0:675.0

2.368

0.1238

 

GAG

0.058

49.2:880.8, 50.6:727.4

1.149

0.2837

2(SNP6-7-9-10)

     
 

GTTA

0.542

521.4:426.6, 429.0:377.0

0.549

0.4589

 

GTCG

0.355

328.2:619.8, 294.3:511.7

0.684

0.4082

 

AGTA

0.047

40.4:907.6, 41.6:764.4

0.806

0.3692

 

ATTA

0.017

27.4:920.6, 2.7:803.3

16.903

3.93E-05

 

GTTG

0.016

4.6:943.4, 23.3:782.7

16.038

6.21E-05

 

GTCA

0.015

13.1:934.9, 12.9:793.1

0.14

0.7079

  1. Bold type indicates significant difference between case and control.
  2. a frequency of haplotype in total subjects.
  3. bfrequency of haplotype: frequency of non-haplotype.