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Table 4 Correlation of Clontech/Affymetrix gene expression levels with TaqMan real-time RT-PCR derived values. C means Clontech array (BD Atlas™ Human1.2 Array or BD Atlas™ Human Cardiovascular Array, A means Affymetrix Human Genome U133A GeneChip, MLCK * = myosin light chain kinase, MHCP 11** = myosin heavy chain polypeptide 11, KCNMB1*** = calcium-activated potassium channel beta, APEG1**** = Homo sapiens nuclear protein, HIF1α***** = hypoxia-inducible factor 1, alpha subunit.

From: Gene expression in acute Stanford type A dissection: a comparative microarray study

Gene Name Array ABI Hs code GenBank Pearson correlation Ratio (D/C) array Ratio (D/C) RT-PCR
r P
collagen VIII α1 C 00156669m1 X57527 0.626 8.36E-03 0.27 0.23
PKD1 C 00165489m1 U24497 0.497 4.78E-02 0.31 0.43
PKD2 C 00165517m1 U50928 0.655 5.11E-03 0.37 0.19
tenascin C C 00233648m1 X78565 0.789 1.96E-04 2.56 5.68
elastin C 00355783m1 M36860 0.676 3.42E-03 0.33 0.14
integrin α5 C 00233743m1 X06256 0.679 3.21E-03 3.5 1.93
decorin C 00370385m1 M14219 0.715 1.48E-03 0.34 0.61
fibulin 5 A 00197064m1 AF112152.1 0.852 6.21E-07 0.47 0.16
MUC18 C 00174838m1 M28882 0.883 2.77E-06 0.31 0.18
MMP11 C 00171829m1 X57766 -0.036 0.89 2.1 0.57
TIMP2 C 00234278m1 J05593 0.521 3.63E-02 0.41 0.53
TIMP3 C 00165949m1 U14394 0.794 1.63E-04 0.2 0.47
vinculin C 00243320m1 M33308 0.807 1.04E-04 0.22 0.31
actin α2 A 00426835g1 J05192.1 0.965 2.77E-12 0.52 0.19
actinin α4 A 00245168m1 U48734.1 0.946 1.03E-10 0.44 0.19
filamin A C 00155065m1 X53416 0.874 4.91E-06 0.33 0.09
MLCK * C 00178736m1 U48959 0.741 7.80E-04 0.36 0.19
MHCP 11** A 00224622m1 NM0228 0.580 9.57E-03 0.48 0.09
leiomodin 1 A 00201704m1 BC001755.1 0.979 4,23E-14 0.43 0.19
heme oxygenase 1 C 00157965m1 X06985 0.837 3.09E-05 8.47 6.58
KCNMB1*** C 00188073m1 U25138 0.763 4.31E-04 0.29 0.29
calponin 1 A 00154543m1 U37019.1 0.985 2.76E-15 0.31 0.13
APEG1* *** A 00195347m1 U57099.1 0.854 5.51E-07 0.58 0.19
HIF1α***** A 00153153m1 U22431.1 -0.932 0.27 1.7 1.86